Data · dataset · 2026
Receptor-Specific Allosteric Architectures Underlie GPCR Coupling Specificity Despite Conserved Activation Mechanisms
Listed in ScienceDB
Description
# Receptor G-protein subunit datasetThis repository contains the molecular dynamics (MD) simulation data used in the manuscript:"Receptor-Specific Allosteric Architectures Underlie GPCR Coupling Specificity Despite Conserved Activation Mechanisms"## ContentsThe dataset includes raw topology files (.pdb) and trajectory files (.dcd) for each system analyzed in the study, as well as the necessary checkpoint files to continue the MD simulations or restart from the point after minimization and equilibration.Additionally included are all MDPath processed outputs and renumbering to allow for easy replication of the findings showcased in the analysis.Each simulation subdirectory is organized by:- G-protein class- Protein/PDB## Directory StructureSupporting_Material/├── Gs/├── Gq/├── Gi/└── README## Example File NamingFor the MOR Gi-subunit bound system:- Supporting_Material/Gi/OPRM_8F7Q_PREPARED## UsageThese data files can be used to:- Reproduce the analyses in the manuscript- Perform additional studies based on this data
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.35500 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Biochemistry and cell biology 71% · Simulation 75%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.35500 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].anzsrc:group:3101 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (71%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[method].local:method:simulation | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/rights |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |