Excel · study · 2026
Functional genomic analysis reveals genes important for Candida albicans fitness in response to antifungal-induced stress
Listed in NCBI GEO
Candida albicans is the leading cause of invasive candidiasis, causing life-threatening infections in immunocompromised individuals.
Description
Antifungal therapies are limited to three main drug classes, polyenes, azoles, and echinocandins, which target either the fungal membrane or fungal cell wall. Resistant isolates have been found for each of the three classes, and with the limited number of treatment options, there is an urgent need to develop new strategies against invasive fungal infections.
Manogepix (MGX) is a novel antifungal currently undergoing phase 3 clinical trials, that functions by inhibiting glycosylphosphatidylinositol (GPI)-anchor biosynthesis. Nikkomycin Z (NikkZ) is a compound also being investigated for its antifungal properties that inhibits fungal chitin synthases. To date, the genes important for resistance to MGX and NikkZ are largely enigmatic.
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This project aims to identify and characterize C. albicans genes that modulate susceptibility to antifungals. To do so, we leveraged a large-scale collection of C. albicans Gene Replacement and Conditional Expression (GRACE) mutants with controllable gene expression through a doxycycline-repressible promoter. Specifically, we identified genes that modulate susceptibility to the echinocandin caspofungin, the azole fluconazole, nikkomycinZ, and manogepix.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE345nnn/GSE345172 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE345172 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1518938 ncbi.nlm.nih.gov/bioproject/PRJNA1518938 ↗
project · from NCBI GEO
Topics
- Stated by source
- Other
- From keywords
- Life Sciences
Provenance · 1 source records, 6 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE345172 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |