Data · dataset · 2023
OCT Mouse Brain Templates
Listed in Teesside University Research Data Repository
These brain templates were created by combining 4 mouse brains acquired with a serial optical coherence tomography scanner (SOCS).
Description
The Advanced Normalization Tools (ANTs) were used to created the normalized brains. The templates were also co-registered to the Allen mouse Common Coordinate Framework (CCF).
The local attenuation contrast was computed from the OCT reflectivity contrast using a single-scattered photon model. These brains were sub-sampled to an isotropic resolution of 50 microns / voxel. More details about the OCT volume reconstruction, template creation and other associated methods are described in the publication listed with this dataset.
Read the rest (1 more)
Please cite both this publication and the dataset reference if you use this data in your own work.
Links
Where it is published
- DOI doi.org/10.17632/33wfgxpmp8.2 ↗
DOI / persistent id · from researchdata tees ac uk
Catalogue records · 1
- OAI-PMH record data.mendeley.com/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Adata… ↗
metadata API · from researchdata tees ac uk
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Mus musculus · Social Science
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Teesside University Research Data Repository | oai:data.mendeley.com/33wfgxpmp8.2 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:engineering | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[organism].NCBITaxon:10090 | mapping · researchdata tees ac uk | vocabulary-mapper@1.0.0 | keywords['Mouse'] |
| description | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| title | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/title |