Data · dataset · 2026
<p>Identification of new glia-specific marker genes.</p>
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<p><b>(A)</b> Schematic representing how glial cell clusters were defined.
Description
Pearson correlation between the transcriptome of the clusters with that of bulk transcriptome of <i>repo</i>-positive and <i>elav</i>-positive cells was used to define glial clusters. The defined clusters were used to find new glial markers. <b>(B)</b> Dot plot showing the newly identified glial markers in the larva (L3).
Numbers identify individual glial clusters, and “Non-Glial Cells” represent the combined gene expression of all the remaining cells from the whole larva dataset from Konstantinides <i>and colleagues</i>, 2022. The color of the dots indicates the mean normalized gene expression across all cells in a group (Average Expression), while the dot size indicates the fraction of cells with nonzero expression (Percent Expressed). <b>(C)</b> Schematic representation of the L3 optic lobe, indicating the position of the different glial cell types (in pink) and the localization of the neuropils (dark gray).
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The blue section represents the plane imaged in the immunostaining shown in (F-F’‘‘). <b>(D)</b> Dot plot showing the newly identified glial markers in the adult dataset per glial cluster. “Non-Glial Cells” represent the combined gene expression of all the remaining cells from the whole adult stage dataset from Özel <i>and colleagues</i>, 2021. <b>(E)</b> Schematic representation of the adult optic lobe, indicating the position of the different glial cell types (in pink) and the localization of the neuropils (dark gray). <b>(F-F’‘‘)</b> Immunostaining of the larval (L3) optic lobe showing the localization of Repo, CG32032 and AnxB9 antibodies. <b>(G-G’‘‘)</b> Immunostaining of the adult optic lobe showing the localization of Repo, CG32032 and AnxB9 antibodies.
CB, Central Brain, fg = fenestrated glia, pg = perineurial glia, spg = subperineurial glia, dsg = distal satellite glia, psg = proximal satellite glia, eg = epithelial glia, mg = marginal glia, xgo = outer chiasm glia, xgi = inner chiasm glia, cxg = cortex glia, mng = medulla neuropil glia, rwg = retina wrapping glia. Scale bar = 20 µm. The code used to generate the graphs can be found in <a href="zenodo.org/records/21890456" target="_blank">zenodo.org/records/21890456</a>.</p>
Links
Where it is published
- DOI doi.org/10.1371/journal.pbio.3004015.g001 ↗
DOI / persistent id · from zivahub uct ac za
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
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Topics
- From keywords
- Biochemistry and cell biology · Cancer · Earth & Environmental Science · Genetics · Life Sciences · Medicine & Health · Plant biology
Provenance · 1 source records, 12 field assertions
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|---|---|---|---|
| ZivaHub | oai:figshare.com:article/34017673 | 13 d ago | JSON v1 |
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| title | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/title |