Omics · study · 2026
mTORC1 activation drives astrocyte reactivity in cortical tubers and brain organoid models of TSC [Bulk RNA-seq]
Listed in NCBI GEO
Tuberous Sclerosis Complex (TSC) is a neurodevelopmental disorder defined by cortical tubers, which are focal malformations of cortical development containing dysplastic cells with hyperactive mTORC1 signaling.
Description
A critical barrier to developing therapeutic approaches for TSC is a lack of understanding of the developmental origins and molecular profile of tuber cells. To address this, we established genetically mosaic cortical organoid models that recapitulate a somatic “second-hit” mutation, which is proposed to drive tuber cell formation.
We find that loss of TSC2 cell-autonomously promotes the differentiation of astrocytes, which are hypertrophic and have an expression profile consistent with reactive astrocytes in neurodegenerative disorders. Using multiplexed immunofluorescence in TSC patient tubers, we identify a cell population with hyperactive mTORC1 signaling that mirrors the reactive astrocyte signature in organoids. Our results demonstrate that reactive astrogliosis is an early, primary feature of TSC, nominating astrocytes as potential therapeutic targets for TSC and related mTORopathies.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE341nnn/GSE341690 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE341690 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1503468 ncbi.nlm.nih.gov/bioproject/PRJNA1503468 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE341690 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |