Omics · study · 2026
T cells in DSS colitis and colon resident T cells by photoconversion [I32]
Listed in NCBI GEO
This study is part of the immgenT Open Source Project, specifically from IGT32, which combines two independent experiments.
Description
The first samples focus on characterizing T cells in DSS-induced colitis. Male and female C57BL/6J wild-type mice were treated with 2.5% DSS in drinking water for 5 days to induce colitis.
Samples were collected at day 5 (end of DSS treatment). The second batch of samples profiles colon-resident T cells identified by photoconversion. Female Kaede transgenic mice (B6.Cg-Tg(CAG-tdKaede)15Utr), at 6–7 weeks of age, underwent intrarectal photoconversion (5 min illumination) to label tissue-resident cells.
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Samples were collected 24 hours post-photoconversion
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE347nnn/GSE347792 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE347792 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1531182 ncbi.nlm.nih.gov/bioproject/PRJNA1531182 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus · Other
- From keywords
- Life Sciences
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE347792 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |