Text · dataset · 2024
biomed-ner
Listed in Hugging Face Datasets
Description
Biomed NER This dataset consists of 4,840 manually annotated text records drawn from PubMed abstracts, drug descriptions from the FDA, and patent abstracts. All entities are continuous, and there are no nested entities. Dataset composition The dataset contains 4,840 annotated text records distributed across three sources: Source Approx. records Purpose PubMed abstracts ~4,300 Core biomedical content FDA drug descriptions ~430 Pharmaceutical text with dense… See the full description on the dataset page: huggingface.co/datasets/knowledgator/biomed_NER.
Links
Where it is published
- Hugging Face dataset page huggingface.co/datasets/knowledgator/biomed_NER ↗
landing page · from Hugging Face
Catalogue records · 1
- Hub API huggingface.co/api/datasets/knowledgator/biomed_NER ↗
metadata API · from Hugging Face
Topics
- Stated by source
- text · token classification
- From keywords
- Computer Science & AI · Life Sciences · Medicine & Health
- Inferred from text
- Text 75%
Provenance · 1 source records, 13 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Hugging Face Datasets | knowledgator/biomed_NER | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · Hugging Face | connector:huggingface@1.0.0 | /gated |
| concepts[field].local:field:computer-science-ai | mapping · Hugging Face | connector:huggingface@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · Hugging Face | vocabulary-mapper@1.0.0 | keywords['biology'] |
| concepts[field].local:field:medicine-health | mapping · Hugging Face | vocabulary-mapper@1.0.0 | keywords['medicine'] |
| concepts[modality].hf_modality:text | source · Hugging Face | connector:huggingface@1.0.0 | |
| concepts[modality].local:modality:text | enrichment · Hugging Face | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[task].hf_task:token-classification | source · Hugging Face | connector:huggingface@1.0.0 | /tags[task_categories:*] |
| created_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| description | source · Hugging Face | connector:huggingface@1.0.0 | /description |
| license | source · Hugging Face | connector:huggingface@1.0.0 | /tags[license:*] |
| publication_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| title | source · Hugging Face | connector:huggingface@1.0.0 | /id |
| updated_date | source · Hugging Face | connector:huggingface@1.0.0 |