Omics · study · 2026
Transcriptomic signatures of Trichomonas vaginalis isolates that exhibit low, intermediate, and high resistance to metronidazole in vitro
Listed in NCBI GEO
As part of efforts to identify genes associated with Trichomonas vaginalis resistance to 5-nitroimidazole drugs, thirty cryopreserved T. vaginalis isolates were revived and grown using Diamonds TYM medium.
Description
Minimum lethal concentrations (MLCs) for metronidazole (MTZ), tinidazole (TDZ), and secnidazole (SEC) were determined using a drug susceptibility assay. Transcriptome profiling was performed for 15 MTZ-sensitive (MTZ-S, MLC < 50µg/mL) and 15 MTZ-resistant (MTZ-R, MLC ≥ 50µg/mL) isolates using next generation RNA-sequencing.
Bioinformatics analyses identified differentially expressed genes (DEGs). Among MTZ-R isolates, 6 exhibited MLCs of 50µg/mL, 5 had MLCs between 100-200 µg/mL, and 4 had MLCs ≥ 400 µg/mL. The low-, intermediate-, and high-level MLC resistant isolates were compared to the MTZ-S isolates and transcriptomic profiling identified 154, 425, and 175 DEGs respectively.
Read the rest (1 more)
MTZ-resistant T. vaginalis isolates exhibited altered expression of virulence factor genes compared to sensitive isolates, with variations in gene expression observed across different MLC levels.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE326nnn/GSE326939 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE326939 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1447967 ncbi.nlm.nih.gov/bioproject/PRJNA1447967 ↗
project · from NCBI GEO
- PubMed 42354938 pubmed.ncbi.nlm.nih.gov/42354938 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
Provenance · 1 source records, 6 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE326939 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |