Table · dataset · 2026
<p>Core machine learning candidate biomarkers.</p>
Listed in figshare and Loughborough Research Repository — shown once because both records carry DOI 10.1371/journal.pone.0349692.t003
<div> <p>Background</p><p>Severe acute pancreatitis (SAP) is associated with persistent organ failure and substantial mortality, yet the transcriptomic mechanisms underlying progression from mild acute pancreatitis to severe-spectrum disease remain incompletely defined.
Description
Early identification of patients at risk of persistent organ failure remains an important unmet clinical need.</p> <p>Methods</p><p>We performed an integrative transcriptomic analysis of peripheral blood RNA-seq data from GSE194331 (healthy controls [HC], n = 32; mild acute pancreatitis [MAP], n = 57; severe-spectrum AP group [SAP group], n = 30, comprising MSAP n = 20 and severe AP n = 10; sampled within 24 hours of admission).
A dual-comparison framework was established using SAP vs HC and SAP vs MAP to distinguish broad AP-associated changes from organ failure-associated features. Gene set enrichment analysis (GSEA), ssGSEA-based immune signature analysis, triple-algorithm machine learning (LASSO, random forest, and SVM-RFE), and weighted gene co-expression network analysis (WGCNA) were integrated to identify candidate genes and characterize associated biological programs.
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Cross-species single-cell RNA-seq data from rat ileal tissue (GSE244963) were used only as supportive cell-type context for candidate genes.</p> <p>Results</p><p>GSEA identified enrichment of NETosis, complement/coagulation, oxidative phosphorylation, and multiple inflammatory cell death-related programs in the SAP group. ssGSEA revealed reduced adaptive immune-associated signatures, with CD8 + T-cell and NK-cell signatures already reduced in MAP and CD4 + T-cell and Treg-associated signatures showing additional reduction in SAP relative to MAP.
Triple-algorithm machine learning identified three core candidate genes with discovery-cohort AUC values: MRPL51 (ML-A, SAP vs HC, AUC = 0.951), C1QA (ML-B, SAP vs MAP, AUC = 0.754), and DACT1 (ML-B, SAP vs MAP, AUC = 0.758). Repeated stratified 5-fold cross-validation supported internal stability of the single-gene estimates, but no independent external validation cohort was available. A neutrophil-associated NETosis gene triad (OLFM4, LTF, and CEACAM6) was additionally co-selected by LASSO and random forest in ML-B. Rat ileal scRNA-seq provided supportive, cross-species cell-type context rather than definitive validation.</p> <p>Conclusion</p><p>Integrative transcriptomic analysis of peripheral blood identifies candidate transcriptomic markers and suggests neutrophil-associated, metabolic, and adaptive immune programs associated with AP severity progression.
The stratified adaptive immune signature reduction pattern and the NETosis-associated gene triad may represent discovery-level transcriptomic features of progression from mild AP to the severe-spectrum AP group. Independent validation in prospective human cohorts is required.</p></div>
Links
Where it is published
- DOI doi.org/10.1371/journal.pone.0349692.t003 ↗
DOI / persistent id · from figshare com
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from figshare com
Topics
- From keywords
- Astronomy & Astrophysics · Biochemistry and cell biology · Biochemistry and cell biology · Cancer · Cancer · Chemistry · Chemistry · Computer Science & AI · Computer Science & AI · Earth & Environmental Science · Earth & Environmental Science · Economics & Finance · Economics & Finance · Engineering · Engineering · Genetics · Genetics · Humanities · Humanities · Immunology · Immunology · Infectious diseases · Infectious diseases · Life Sciences · Life Sciences · Materials Science · Mathematics & Statistics · Medicine & Health · Medicine & Health · Microbiology · Microbiology · Ocean & Atmospheric Science · Plant biology · Plant biology · Psychology & Behavioral Science · Social Science · Social Science · Virology · Virology
- Inferred from text
- Disease 75% · RNA sequencing 65% · Single-cell RNA sequencing 65%
Provenance · 2 source records, 47 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| figshare | oai:figshare.com:article/33998988 | 12 d ago | JSON v1 |
| Loughborough Research Repository | oai:figshare.com:article/33998988 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · figshare com | connector:figshare_com@1.0.0 | |
| concepts[disease].local:disease:cancer | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Cancer'] |
| concepts[disease].local:disease:cancer | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Cancer'] |
| concepts[disease].local:disease:disease | enrichment · figshare com | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:field:310706 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Virology'] |
| concepts[field].anzsrc:field:310706 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Virology'] |
| concepts[field].anzsrc:field:320211 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Infectious Diseases'] |
| concepts[field].anzsrc:field:320211 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Infectious Diseases'] |
| concepts[field].anzsrc:group:3101 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Cell Biology'] |
| concepts[field].anzsrc:group:3101 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Cell Biology'] |
| concepts[field].anzsrc:group:3105 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Genetics'] |
| concepts[field].anzsrc:group:3105 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Genetics'] |
| concepts[field].anzsrc:group:3107 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Microbiology'] |
| concepts[field].anzsrc:group:3107 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Microbiology'] |
| concepts[field].anzsrc:group:3108 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Plant Biology'] |
| concepts[field].anzsrc:group:3108 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Plant Biology'] |
| concepts[field].anzsrc:group:3204 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Immunology'] |
| concepts[field].anzsrc:group:3204 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Immunology'] |
| concepts[field].local:field:astronomy | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:engineering | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:engineering | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:humanities | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:materials-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:mathematics-statistics | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:psychology-behavioral | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[modality].local:modality:rna-seq | enrichment · figshare com | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · figshare com | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/description |
| license | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/rights |
| publication_date | source · figshare com | connector:figshare_com@1.0.0 | |
| title | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/title |