Excel · study · 2026
Effect of long-term strong confinement on gene expression of HeLa Kyoto cells
Listed in NCBI GEO
Physical microenvironment confinement is a hallmark of the tumor landscape, yet the long-term impact of such mechanical constraints on cell fate remains elusive.
Description
While the mesenchymal–amoeboid transition (MAT) is known to enhance migratory capacity and therapy resistance, the regulatory mechanisms governing cell state adaptation under sustained physical pressure are not fully understood. In this study, we performed RNA-seq analysis on cancer cells subjected to prolonged physical space confinement to investigate the resulting transcriptional landscape.
Our data reveal that sustained confinement serves as a potent mechanical cue that triggers a distinct migration mode conversion. Notably, we identify the necroptosis-related protein MLKL as a critical transcriptional target induced by prolonged confinement. These findings provide a novel link between mechanical stress, the MAT process, and potential alterations in cell fate.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE328nnn/GSE328527 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE328527 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1210525 ncbi.nlm.nih.gov/bioproject/PRJNA1210525 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Cancer 75% · RNA sequencing 65%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE328527 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |