Omics · study · 2026
Functional analysis of the temperature-sensing system in the human pathogenic vibrio
Listed in NCBI GEO
Vibrio vulnificus produces a significant amount of serine protease VvsA at 26 °C, whereas its production is suppressed at 37 °C. To elucidate the mechanism underlying this environmental temperature sensing, we screened a transposon Tn10 insertion mutant library.
Description
We successfully isolated strain NCT1154, which produces sufficient levels of VvsA at 37 °C, and strain F53, which exhibits negligible VvsA production at 26 °C. Comparative transcriptome analysis of these two mutants against the reference mutant, strain NCT776, revealed widespread alterations in temperature-dependent gene expression.
In strain NCT1154, 80 genes normally expressed at 26 °C in the reference strain were expressed at 37 °C. Conversely, in strain F53, 88 genes typically expressed at 37 °C were expressed at 26 °C. Furthermore, analysis of the temperature-responsive genes in the reference strain demonstrated that approximately 30% of the genes lost their temperature dependence in these mutants. Crucially, we identified the specific genes disrupted by Tn10 in both mutans.
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These findings demonstrate that the products of these two identified genes play a pivotal role in sensing environmental temperature changes and regulating global gene expression in V. vulnificus.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE344nnn/GSE344803 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE344803 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1517522 ncbi.nlm.nih.gov/bioproject/PRJNA1517522 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
Provenance · 1 source records, 6 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE344803 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |