Table · dataset · 2026
Supplementary file 1_Exploration of novel ecological niches for pigmented bacteria with dye bioremediation potential.docx
Listed in ZivaHub and Deakin Research Online and DMU Figshare and HKU DataHub and Swinburne Figshare and DaYta Ya Rona and SUNScholarData and figshare and Loughborough Research Repository and GRANTS Data and UP Research Data Repository — shown once because both records carry DOI 10.3389/fmicb.2026.1895442.s001
Introduction<p>This study explores the comparative bioremediation potential of pigmented bacteria isolated from diverse ecological niches.
Description
Three distinct isolates were identified: Shewanella xiamenensis (U2f, from goldfish gills), Paracoccus sp. (THN1, a rose thorn endophyte), and Kocuria sp.
(YC, an incidental laboratory isolate).</p>Methods<p>The isolated bacterial pigments were characterized using FTIR spectroscopy. The isolates and a developed bacterial consortium were evaluated for their ability to tolerate, decolorize, and degrade various synthetic dyes (Congo red, malachite green, bromophenol blue, methylene blue, and crystal violet). The resulting decolorization and biodegradation processes were validated using UV–Vis spectroscopic analysis, FTIR spectroscopy, and HPLC.</p>Results<p>FTIR analysis indicated that the tan pigment from S. xiamenensis (U2f) was similar to melanin, the bright orange pigment from Paracoccus sp.
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(THN1) to astaxanthin, and the yellow pigment from Kocuria sp. (YC) to carotenoids. For bioremediation, S. xiamenensis (U2f) successfully decolorized the azo dye Congo red up to 200 mg/mL (70% efficiency) and tolerated levels up to 400 mg/mL.
Conversely, Paracoccus sp. (THN1) and Kocuria sp. (YC) decolorized the triphenylmethane dye malachite green up to 200 mg/mL with 80–91% efficiency, tolerating concentrations up to 500 mg/mL.
Notably, a consortium of Paracoccus sp. and Kocuria sp. achieved 100% degradation efficiency of malachite green (200 mg/mL) within 16 hours under shaking conditions.</p>Discussion<p>These findings highlight the unique, niche-specific bioremediation capabilities of pigmented bacteria. The results demonstrate that targeted single isolates or designed consortia exhibit distinct and highly efficient degradation pathways against specific classes of toxic synthetic dyes, offering a promising tool for targeted environmental cleanup.</p>
Links
Where it is published
- DOI doi.org/10.3389/fmicb.2026.1895442.s001 ↗
DOI / persistent id · from zivahub uct ac za
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from zivahub uct ac za
Topics
- From keywords
- Astronomy & Astrophysics · Bioremediation · Bioremediation · Bioremediation · Bioremediation · Bioremediation · Bioremediation · Bioremediation · Bioremediation · Bioremediation · Bioremediation · Bioremediation · Chemistry · Chemistry · Chemistry · Computer Science & AI · Computer Science & AI · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Economics & Finance · Economics & Finance · Engineering · Engineering · Engineering · Engineering · Humanities · Humanities · Humanities · Humanities · Humanities · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Materials Science · Mathematics & Statistics · Medicine & Health · Medicine & Health · Microbiology · Microbiology · Microbiology · Microbiology · Microbiology · Microbiology · Microbiology · Microbiology · Microbiology · Microbiology · Microbiology · Ocean & Atmospheric Science · Psychology & Behavioral Science · Psychology & Behavioral Science · Social Science · Social Science · Social Science · Social Science · Social Science
Provenance · 11 source records, 78 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ZivaHub | oai:figshare.com:article/34039167 | 5 d ago | JSON v1 |
| Deakin Research Online | oai:figshare.com:article/34039167 | 5 d ago | JSON v1 |
| DMU Figshare | oai:figshare.com:article/34039167 | 5 d ago | JSON v1 |
| HKU DataHub | oai:figshare.com:article/34039167 | 5 d ago | JSON v1 |
| Swinburne Figshare | oai:figshare.com:article/34039167 | 5 d ago | JSON v1 |
| DaYta Ya Rona | oai:figshare.com:article/34039167 | 5 d ago | JSON v1 |
| SUNScholarData | oai:figshare.com:article/34039167 | 5 d ago | JSON v1 |
| figshare | oai:figshare.com:article/34039167 | 4 d ago | JSON v1 |
| Loughborough Research Repository | oai:figshare.com:article/34039167 | 4 d ago | JSON v1 |
| GRANTS Data | oai:figshare.com:article/34039167 | 4 d ago | JSON v1 |
| UP Research Data Repository | oai:figshare.com:article/34039167 | 4 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].anzsrc:field:410303 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['bioremediation'] |
| concepts[field].anzsrc:field:410303 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['bioremediation'] |
| concepts[field].anzsrc:field:410303 | mapping · scholardata sun ac za | vocabulary-mapper@1.0.0 | keywords['bioremediation'] |
| concepts[field].anzsrc:field:410303 | mapping · figshare dmu ac uk | vocabulary-mapper@1.0.0 | keywords['bioremediation'] |
| concepts[field].anzsrc:field:410303 | mapping · researchdata up ac za | vocabulary-mapper@1.0.0 | keywords['bioremediation'] |
| concepts[field].anzsrc:field:410303 | mapping · dro deakin edu au | vocabulary-mapper@1.0.0 | keywords['bioremediation'] |
| concepts[field].anzsrc:field:410303 | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['bioremediation'] |
| concepts[field].anzsrc:field:410303 | mapping · datahub hku hk | vocabulary-mapper@1.0.0 | keywords['bioremediation'] |
| concepts[field].anzsrc:field:410303 | mapping · figshare swinburne edu au | vocabulary-mapper@1.0.0 | keywords['bioremediation'] |
| concepts[field].anzsrc:field:410303 | mapping · grantsdata jst go jp | vocabulary-mapper@1.0.0 | keywords['bioremediation'] |
| concepts[field].anzsrc:field:410303 | mapping · dayta nwu ac za | vocabulary-mapper@1.0.0 | keywords['bioremediation'] |
| concepts[field].anzsrc:group:3107 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Microbiology'] |
| concepts[field].anzsrc:group:3107 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Microbiology'] |
| concepts[field].anzsrc:group:3107 | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['Microbiology'] |
| concepts[field].anzsrc:group:3107 | mapping · scholardata sun ac za | vocabulary-mapper@1.0.0 | keywords['Microbiology'] |
| concepts[field].anzsrc:group:3107 | mapping · dro deakin edu au | vocabulary-mapper@1.0.0 | keywords['Microbiology'] |
| concepts[field].anzsrc:group:3107 | mapping · grantsdata jst go jp | vocabulary-mapper@1.0.0 | keywords['Microbiology'] |
| concepts[field].anzsrc:group:3107 | mapping · figshare dmu ac uk | vocabulary-mapper@1.0.0 | keywords['Microbiology'] |
| concepts[field].anzsrc:group:3107 | mapping · researchdata up ac za | vocabulary-mapper@1.0.0 | keywords['Microbiology'] |
| concepts[field].anzsrc:group:3107 | mapping · datahub hku hk | vocabulary-mapper@1.0.0 | keywords['Microbiology'] |
| concepts[field].anzsrc:group:3107 | mapping · figshare swinburne edu au | vocabulary-mapper@1.0.0 | keywords['Microbiology'] |
| concepts[field].anzsrc:group:3107 | mapping · dayta nwu ac za | vocabulary-mapper@1.0.0 | keywords['Microbiology'] |
| concepts[field].local:field:astronomy | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · scholardata sun ac za | connector:scholardata_sun_ac_za@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · dayta nwu ac za | connector:dayta_nwu_ac_za@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare swinburne edu au | connector:figshare_swinburne_edu_au@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · scholardata sun ac za | connector:scholardata_sun_ac_za@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · grantsdata jst go jp | connector:grantsdata_jst_go_jp@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare dmu ac uk | connector:figshare_dmu_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · dro deakin edu au | connector:dro_deakin_edu_au@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:engineering | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:engineering | mapping · dayta nwu ac za | connector:dayta_nwu_ac_za@1.0.0 | |
| concepts[field].local:field:engineering | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:humanities | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · dayta nwu ac za | connector:dayta_nwu_ac_za@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scholardata sun ac za | connector:scholardata_sun_ac_za@1.0.0 | |
| concepts[field].local:field:humanities | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:humanities | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare swinburne edu au | connector:figshare_swinburne_edu_au@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · grantsdata jst go jp | connector:grantsdata_jst_go_jp@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · dro deakin edu au | connector:dro_deakin_edu_au@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare dmu ac uk | connector:figshare_dmu_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · dayta nwu ac za | connector:dayta_nwu_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scholardata sun ac za | connector:scholardata_sun_ac_za@1.0.0 | |
| concepts[field].local:field:materials-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:mathematics-statistics | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:psychology-behavioral | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:psychology-behavioral | mapping · scholardata sun ac za | connector:scholardata_sun_ac_za@1.0.0 | |
| concepts[field].local:field:social-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · dayta nwu ac za | connector:dayta_nwu_ac_za@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scholardata sun ac za | connector:scholardata_sun_ac_za@1.0.0 | |
| concepts[field].local:field:social-science | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:social-science | mapping · figshare com | connector:figshare_com@1.0.0 | |
| description | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/description |
| license | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/rights |
| publication_date | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| title | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/title |