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Data · dataset · 2023

Global Typhoid Genomics Consortium 2022 - Genome Assemblies

Listed in LSHTM Data Compass

Whole genome assemblies of Salmonella enterica serovar Typhi assembled for the Global Typhoid Genomics Consortium paper: "Global diversity and antimicrobial resistance of typhoid fever pathogens: insights from 13,000 Salmonella Typhi genomes" (BioRxiv, 2022).

Description

Total n=13,000 genomes, each is gzipped fasta format and then grouped into tar balls based on genotype. Genomes are listed in CSV file TGC_data.csv which includes source and quality information, accessions for raw reads, and genome-derived genotype and AMR variables.

Links

Where it is published

Catalogue records · 1

Topics

From keywords
Earth & Environmental Science · Humanities · Life Sciences · Medicine & Health · Social Science
Inferred from text
Evolutionary biology 70%
Provenance · 1 source records, 9 field assertions
SourceKeyLast seenRaw
LSHTM Data Compassoai:datacompass.lshtm.ac.uk:340111 d agoJSON v1
FieldAssertionExtractorEvidence
concepts[field].anzsrc:group:3104enrichment · lshtm ac uktaxonomy-embedding@1.0.0title+keywords+description (70%)
concepts[field].local:field:earth-environmentalmapping · lshtm ac ukconnector:lshtm_ac_uk@1.0.0
concepts[field].local:field:humanitiesmapping · lshtm ac ukconnector:lshtm_ac_uk@1.0.0
concepts[field].local:field:life-sciencesmapping · lshtm ac ukconnector:lshtm_ac_uk@1.0.0
concepts[field].local:field:medicine-healthmapping · lshtm ac ukconnector:lshtm_ac_uk@1.0.0
concepts[field].local:field:social-sciencemapping · lshtm ac ukconnector:lshtm_ac_uk@1.0.0
descriptionsource · lshtm ac ukconnector:lshtm_ac_uk@1.0.0/metadata/dc/description
publication_datesource · lshtm ac ukconnector:lshtm_ac_uk@1.0.0
titlesource · lshtm ac ukconnector:lshtm_ac_uk@1.0.0/metadata/dc/title