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Omics · study · 2026

I-tRF-Asp promotes vascular remodeling in hypoxic pulmonary hypertension via hnRNPU phase separation which affects TCF7L2 alternative splicing.

Listed in NCBI GEO

BACKGROUND: Pulmonary hypertension (PH) is a fatal disease characterized by pulmonary vascular remodeling, primarily driven by excessive proliferation of pulmonary arterial smooth muscle cells (PASMCs).

Description

While non-coding RNAs such as circular RNAs have been implicated in PH, the role of tRNA-derived small RNA (tsRNA) remains poorly understood. Among them, i-tRF-Asp represents a novel tsRNA whose function in hypoxic PH is unknown.

This study aims to investigate whether i-tRF-Asp contributes to PASMC proliferation and vascular remodeling in hypoxic PH. METHODS: To elucidate the functional role of i-tRF-Asp, loss-of-function experiments were conducted in vitro using hypoxic mouse PASMCs (mPASMCs), alongside in vivo studies utilizing both SuHx (Sugen5416+hypoxia) induced pulmonary hypertension models in both adult male C57BL/6 mice and Sprague-Dawley rats.

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These models employed antisense oligonucleotide inhibitor and adeno-associated virus-mediated silencing. The underlying mechanisms were further explored via RNA immunoprecipitation, liquid-liquid phase separation assays, cell proliferation assessment, western blot, alternative splicing profiling and molecular dynamics simulation. RESULTS: Inhibition of i-tRF-Asp ameliorated hypoxia-induced pulmonary vascular remodeling, primarily through suppressing excessive proliferation of mPASMCs.

Further analysis indicated that i-tRF-Asp facilitates liquid–liquid phase separation (LLPS) of hnRNPU. This process mediates selective recruitment of Tcf7l2 pre-mRNA and promotes alternative splicing, resulting in a pro-proliferative Tcf7l2 transcript variant that drives mPASMC proliferation. Furthermore, we have identified that the endonuclease ERN1 can upregulate the expression of i-tRF-Asp.

CONCLUSION: The endoribonuclease ERN1 upregulates the expression of i-tRF-Asp, which in turn facilitates mPASMC proliferation and pulmonary vascular remodeling. This process is driven by hnRNPU LLPS-dependent alternative splicing of the long Tcf7l2 transcript isoform.

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Disease 75% · Simulation 75%
Provenance · 1 source records, 9 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE32857014 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[disease].local:disease:diseaseenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:non-coding-rna-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[method].local:method:simulationenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[organism].NCBITaxon:10090source · NCBI GEOconnector:ncbi_geo@1.0.0/taxon
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title