Omics · study · 2026
Inactivation of a chromosome- and plasmid-localised HEPN-MNT TA system alters expression of key regulators of nitrogen assimilation and arginine biosynthesis in Synechocystis sp. PCC 6803
Listed in NCBI GEO
Toxin–antitoxin (TA) systems play key roles in regulating cellular physiology and stress responses.
Description
In Synechocystis, two HEPN-MNT TA systems are located on the chromosome (mnt-hepn(c)) and pSYSM plasmid (mnt-hepn(p)). Although individual gene deletions were viable, simultaneous disruption of both systems was lethal, demonstrating their essential role in cell survival.
The partially segregated double mutant (∆∆mnt-hepn(cp)) showed slow growth and a pale-yellow phenotype. Sequence and structural analyses revealed conserved HEPN and MNT motifs similar to that of Shewanella, where MNT neutralizes HEPN ribonuclease activity through AMPylation. Physical association of TA components were demonstrated by overexpression co-elution assay.
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Individual mutants displayed enhanced growth, electron transport rate, and PSII activity. Transcriptomic analyses revealed increased expression of gifA, gifB, and pirA, and reduced expression of nrtABCD, nirA, and glnA. Increased stability of gifA and pirA transcripts suggests that HEPN mediates their degradation, possibly with NsiR4, thereby regulating nitrogen assimilation and cellular physiology post-transcriptionally.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE346nnn/GSE346365 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE346365 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1525040 ncbi.nlm.nih.gov/bioproject/PRJNA1525040 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
Provenance · 1 source records, 6 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE346365 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |