Omics · study · 2026
CyCLoPs: A approach for detecting immune responses with in vivo labeling of cytokine activity
Listed in NCBI GEO
Many studies have centered on delineating cytokine-producing cells, aiming for a comprehensive grasp of upstream signals and critical transcription factors linked to cytokine production.
Description
However, it is largely unknown which cell types respond to cytokines. Herein, we developed a reporter system, Cytokine-Cellular-Locating-Platforms (CyCLoPs), that transforms the cytokine and its receptor engagement into a genetically tractable signal.
In vitro, CyCLoPs exhibited remarkable specificity, a high signal-to-background ratio, and broad applicability to probe interactions between cytokines and their receptors. In vivo, the IL-17A-CyCLoPs reporter mouse enabled the detection of IL-17A-responsive cells in the ilea, primarily located at the villi rather than the crypt, following colonization by a commensal bacterium. In addition, the IFN-γ-CyCLoPs mouse facilitated the identification of IFN-γ-exposed CD8+ T cells in tumors with reduced effector function.
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These CD8+ T cells were marked by various cell-surface proteins, such as CD36, CD38, and Leptin receptor, of which expression was dependent on IFN-γ. Thus, our developed CyCLoPs enable visualizing cytokine-induced responses at a single-cell resolution, paving the ways to investigate how cytokines produce distinct immunological outcomes in health and disease.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE309nnn/GSE309768 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE309768 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1363146 ncbi.nlm.nih.gov/bioproject/PRJNA1363146 ↗
project · from NCBI GEO
- PubMed 41506266 pubmed.ncbi.nlm.nih.gov/41506266 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Disease 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE309768 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |