Omics · dataset · 2020
sequ-into demo/test data
Listed in Teesside University Research Data Repository
# sequ-into demo data This archive/folder contains the demo data for sequ-into.
Description
Most relevant workflows/use-cases are explorable with these data. Obviously the live-setup can not be fully simulated with these data, as this would require a lab, a sequencer, material, etc.
However, both the retrospective analysis and the use of temporary fastq-files (basecalled, but in MinKNOW tmp-folder) from MinKNOW can be explored. ## Use-cases 1. The [first use-case](1_fastq_retro/README.MD) describes the usage of sequ-into with a FASTQ file. 2. The [second use-case](2_fast5_single_retro/README.MD) describes the usage of sequ-into with (older) single-FAST5-Files (e.g. one read per FAST5 file).
Read the rest (3 more)
This use-case is particularly useful for a retrospective analysis. 3. The [third use-case](3_fast5_live_tmp/README.MD) demonstrates the usage of FASTQ-TMP-Files with sequ-into. 4. The [fourth use-case](4_fast5_multi_retro/README.MD) describes the usage of sequ-into with modern multi-FAST5 files (e.g. multiple reads per FAST5 file).
This use-case is particularly useful for retrospective analyses of recent MinION data. 5. The [fifth use-case](5_fast5_single_retro_extension/README.MD) extends the second use-case by adding more reads. This simulates the progress over time for a real-time analysis. ## Data Usage The included read data (FASTQ/FAST5/tmp-files) may only be used for testing sequ-into and remain property of the designated authors (under Data origin in each use-case).
This data may be shared under CC BY NC 3.0 license. The respective authors gave consent for using these files as part of this demo data collection only.
Links
Where it is published
- DOI doi.org/10.17632/tk8m6h62b2.1 ↗
DOI / persistent id · from researchdata tees ac uk
Catalogue records · 1
- OAI-PMH record data.mendeley.com/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Adata… ↗
metadata API · from researchdata tees ac uk
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · RNA sequencing · Social Science
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Teesside University Research Data Repository | oai:data.mendeley.com/tk8m6h62b2.1 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].local:field:earth-environmental | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:engineering | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[modality].local:modality:rna-seq | mapping · researchdata tees ac uk | vocabulary-mapper@1.0.0 | keywords['RNA Sequencing'] |
| description | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/description |
| license_text | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| publication_date | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| title | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/title |