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Data · dataset · 2023

TwinNetworkDataset033

Listed in RADAR and RADAR4Memory — shown once because both records carry DOI 10.48606/91

The data comprises bright-field time-lapse images of zebrafish embryos acquired in multiple batches within multi-well plates using an Acquifer Imaging Machine.

Description

Embryos from incrosses of TE zebrafish strains were used for imaging. Small-molecule signaling pathway modulator LDN-193189 was added to wells A3-A6 with final concentrations of 4 µM, to wells B1-B4 with final concentrations of 3.5 µM, and to wells B5-B6 with final concentrations of 12 µM. Small-molecule signaling pathway modulator SB-505124 was added to wells C1-C6 with final concentrations of 5 µM and to wells D1-D6 with final concentrations of 6 µM. Wells A1 and A2 did not receive small-molecule signaling pathway modulator treatment.

Imaging started with embryos between 2-2.5 hpf and ended with embryos between 26-26.5 hpf. Images of embryos were acquired at 720 acquisition time points with a time interval of 120 s between each acquisition time point. Individual embryo segments were identified and extracted using a trained neural network for object detection.

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Within this experiment folder, data are organized by microscope position and embryo number.

Links

Where it is published

Catalogue records · 1

Topics

Inferred from text
Image 65% · Imaging 75%
Provenance · 2 source records, 19 field assertions
SourceKeyLast seenRaw
RADAR10.48606/9113 d agoJSON v1
RADAR4Memory10.48606/9113 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · radar service eu deconnector:radar_service_eu_de@1.0.0
concepts[field].anzsrc:field:461103mapping · radar4memory radar service euvocabulary-mapper@1.0.0keywords['deep learning']
concepts[field].anzsrc:field:461103mapping · radar service eu devocabulary-mapper@1.0.0keywords['deep learning']
concepts[field].anzsrc:group:3102mapping · radar4memory radar service euvocabulary-mapper@1.0.0keywords['computational biology']
concepts[field].anzsrc:group:3102mapping · radar service eu devocabulary-mapper@1.0.0keywords['computational biology']
concepts[field].local:field:computer-science-aimapping · radar4memory radar service euconnector:radar4memory_radar_service_eu@1.0.0
concepts[field].local:field:computer-science-aimapping · radar service eu deconnector:radar_service_eu_de@1.0.0
concepts[field].local:field:earth-environmentalmapping · radar service eu deconnector:radar_service_eu_de@1.0.0
concepts[field].local:field:earth-environmentalmapping · radar4memory radar service euconnector:radar4memory_radar_service_eu@1.0.0
concepts[field].local:field:life-sciencesmapping · radar4memory radar service euconnector:radar4memory_radar_service_eu@1.0.0
concepts[field].local:field:life-sciencesmapping · radar service eu deconnector:radar_service_eu_de@1.0.0
concepts[modality].local:modality:imageenrichment · radar service eu dekeyword-concept-rules@1.0.0title+description (65%)
concepts[modality].local:modality:imagingenrichment · radar service eu dekeyword-concept-rules@1.0.0title+description (75%)
concepts[organism].NCBITaxon:7955mapping · radar4memory radar service euvocabulary-mapper@1.0.0keywords['zebrafish']
concepts[organism].NCBITaxon:7955mapping · radar service eu devocabulary-mapper@1.0.0keywords['zebrafish']
descriptionsource · radar service eu deconnector:radar_service_eu_de@1.0.0/metadata/dc/description
licensesource · radar service eu deconnector:radar_service_eu_de@1.0.0/metadata/dc/rights
publication_datesource · radar service eu deconnector:radar_service_eu_de@1.0.0
titlesource · radar service eu deconnector:radar_service_eu_de@1.0.0/metadata/dc/title