Omics · study · 2026
Detecting chromatin accessibility changes that are dependent on ATF4 under mitochondrial stress
Listed in NCBI GEO
ATF4 is a stress-responsive gene which is critical for cell survival under stress conditions.
Description
ATF4 expression is upregulated under mitochondrial stress and the expression of a few chromatin remodelling genes are regulated by ATF4. ATAC-seq was performed on differentiated neurons after shATF4 knock-down under normal and mitochondrial stress conditions.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE242nnn/GSE242581 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242581 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1013966 ncbi.nlm.nih.gov/bioproject/PRJNA1013966 ↗
project · from NCBI GEO
- PubMed 42383245 pubmed.ncbi.nlm.nih.gov/42383245 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE242581 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |