Data and code linked to the manuscript '<b>High nitrogen deposition is associated with phosphorus-efficient ectomycorrhizas in Europe's Scots pine forests</b>'

Files include:</p><ul><li><u>Sequential bioinformatic workflow to generate the community data (OTU table) used in the study</u> :</li><li><ul><li><b><i>'1.bioinfo_pipeline_assemble_fasta.slurm'</i></b> produces the fasta file <b><i>'final.fasta'</i></b> containing sequences used for the assignment of species hypotheses;</li><li><b><i>'</i></b><b><i>2.bioinfo_pipeline_blast_denovo.slurm'</i></b> generates .uc files which are assembled in a final OTU table by the R code; <b><i>'</i></b><b><i>3.script_get_final_species_list.r'</i></b> and associated .csv files <b><i>'otu_checked.csv'</i></b> and <b><i>'sh_correction.csv'</i></b>.</li></ul></li><li><u>R code to produce the results presented in the manuscript, with associated full trait table and sites environmental data and metadata</u></li><li><ul><li><b><i>'</i></b><b><i>4.script_data_analysis.r'</i></b> combines OTU (<b><i>'otu.xlsx'</i></b>) and trait (<b><i>'traits_full_table.xlsx'</i></b>) data and produces the manuscript results (including supplementary tables and figures);</li><li><b><i>'sites.xlsx'</i></b> contains site environmental (e.g. N deposition) and host (foliar N:P) variables, and metadata (e.g. geographic coordinates,...).</li></ul></li></ul><p><br></p>