Omics · study · 2026
Influence of lateral compression on epithelium and role of lamin A in this process
Listed in NCBI GEO
Intercellular compressive forces during cellular packing and maturation of epithelium are guided by cellular mechanotransduction.
Description
In this study, the goal was to identify how lateral compression alters gene expression in the epithelium, and given that nuclear lamina -mediated nuclear mechanics contribute in mechanotransduction, we sought to decipher the role of A-type lamins in this process. We used Madine Darby canine kidney type II (MDCKII) cells as wild-type (WT) cells and established a derivative pre-lamin A knockout (referred here as LMNA KO) cell line.
Cells were grown for 3-4 days until an intact monolayer was formed (but which had not reached maturity). We applied our in house developed Brick Strex cell stretching deviceand cultured cells in this device on a pre-stretched and pre-strained PDMS with 25 % tensile strain, inducing a 20 % lateral compressive strain upon gradual release of the pre-strain. After a 2 h recovery, total cell lysates were made and mRNA was extracted for mRNA-seq.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE325nnn/GSE325464 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE325464 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1439950 ncbi.nlm.nih.gov/bioproject/PRJNA1439950 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
Provenance · 1 source records, 6 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE325464 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |