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Omics · dataset · 2026

Additional file 3 of Integrative ATAC-Seq and RNA-Seq analysis identifies key genes for intramuscular fat content in Laiwu pigs

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Supplementary Material 3: Table S1: Distribution of the accessible chromatin regions (ACRs) in high intramuscular fat (IMF) content (IMF-H) group and low IMF content (IMF-L) group.

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Table S2: Differential accessible chromatin peaks between high intramuscular fat (IMF-H) and low intramuscular fat (IMF-L) groups. Table S3: Differential accessible chromatin peaks among six individuals and strictly group-specific peaks between high intramuscular fat (IMF-H) and low intramuscular fat (IMF-L) groups.

Table S4: Significantly enriched pathways (p < 0.05) from group-shared differential accessible chromatin-linked genes. Table S5: Significantly enriched Gene Ontology (GO) terms (p < 0.05) from group-shared differential accessible chromatin-linked genes. Table S6: Association analysis between SNPs in the accessible chromatin region (ACR) of the CTSL gene and intramuscular fat (IMF) content in 79 Laiwu pigs.

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Table S7: Association analysis between SNPs in the accessible chromatin region (ACR) of the GTF3C3 gene and intramuscular fat (IMF) content in 79 Laiwu pigs

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