Omics · study · 2026
Lysosome-Related Organelles Orchestrate Biogenic Crystal Formation in Pigment Cells
Listed in NCBI GEO
Lysosome-related organelles (LROs) enable cell-type-specific functions by adapting endolysosomal pathways for specialized roles.
Description
Here, we show that iridosomes - optically active, guanine crystal-forming organelles in zebrafish iridophores - constitute a previously unrecognized class of LROs. Using transcriptomic profiling of purified iridophores, CRISPR-Cas9 gene perturbation, and cryogenic transmission electron microscopy, we identify a conserved molecular program governing iridosome biogenesis.
Key LRO regulators, including rab32a, ap3M2, and hps5, are required for crystal formation, with gene disruptions leading to reduced organelle number and distorted crystal morphology. We also observe hallmark LRO features such as intraluminal vesicles and dynamic pH regulation during maturation. Cross-species transcriptomic analysis reveals that the LRO identity of iridosomes is conserved in vertebrates including fish and reptiles, suggesting ancient evolutionary roots.
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These findings expand the LRO paradigm to include organelles dedicated to crystalline assembly and establish iridophores as a model for investigating how cells build structurally specialized organelles through coordinated trafficking, acid-base regulation, and biomineralization.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE297nnn/GSE297759 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE297759 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1266131 ncbi.nlm.nih.gov/bioproject/PRJNA1266131 ↗
project · from NCBI GEO
Topics
- Stated by source
- Danio rerio · Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Microscopy 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE297759 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:microscopy | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:7955 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |