Data · dataset · 2026
Investigation and development of novel exposome informatics methodologies and solutions for the analysis and integration of phenome, genome and exposome data
Listed in ZivaHub and Deakin Research Online and DMU Figshare — shown once because both records carry DOI 10.17034/32637606.v1
The exposome, is a concept introduced in 2005 by Christopher P. Wild.
Description
The exposome details every exposure an individual comes into contact during their lifetime, after conception. It is possible to view the exposome as its constituent parts, for example chemical compounds, biological factors, physical phenomena and socio-economic factors.
The exposome is a sibling of the genome (total number of genes) and phenome (total number of phenotypes), representing inter-connected components of human health and disease. <br><br>Biomedical informatics has played a key part in advancing phenome and genome research through computational means. For example, knowledge representation tools (ontologies, vocabularies and dictionaries), text-mining methodologies and informatics frameworks.
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However, the exposome field, as a more recently emerging domain, has still to receive the same level of informatic methodologies and tools from biomedical informatics. <br><br>This thesis investigates the following hypothesis ‘Biomedical informatics and open data can be leveraged to fill existing methodological gaps and investigate the exposome’, to fulfil an existing knowledge gap in exposome research. <br><br>This thesis therefore details the creation of a data-driven infrastructure which integrates the relationships between the exposome, genome and phenome through investigation and development of new methodologies and solutions, which utilise open-source data. <br><br>The Phexpo Suite is a collective representation of the cumulative work of the developed methodologies presented in the thesis.
The Phexpo Suite, where Phexpo is derived from ‘phenotype-exposome’, is an informatics resource that provides the ability to identify, analyse and explore the relationships between different components of the exposome (chemical compounds, physical phenomena or socio-economic factors) and phenome, through integration with the genome.<br><br><i>Thesis is embargoed until 31 December 2027</i>.<br><br>
Links
Where it is published
- DOI doi.org/10.17034/32637606.v1 ↗
DOI / persistent id · from zivahub uct ac za
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from zivahub uct ac za
Topics
- From keywords
- Computer Science & AI · Computer Science & AI · Computer Science & AI · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Life Sciences · Life Sciences · Life Sciences
- Inferred from text
- Applied computing 71% · Disease 75%
Provenance · 3 source records, 15 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ZivaHub | oai:figshare.com:article/32637606 | 5 d ago | JSON v1 |
| Deakin Research Online | oai:figshare.com:article/32637606 | 5 d ago | JSON v1 |
| DMU Figshare | oai:figshare.com:article/32637606 | 5 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[disease].local:disease:disease | enrichment · zivahub uct ac za | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:group:4601 | enrichment · zivahub uct ac za | taxonomy-embedding@1.1.0 | title+keywords+description (71%) |
| concepts[field].local:field:computer-science-ai | mapping · dro deakin edu au | connector:dro_deakin_edu_au@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · figshare dmu ac uk | connector:figshare_dmu_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · dro deakin edu au | connector:dro_deakin_edu_au@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare dmu ac uk | connector:figshare_dmu_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare dmu ac uk | connector:figshare_dmu_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · dro deakin edu au | connector:dro_deakin_edu_au@1.0.0 | |
| description | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/description |
| license_text | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| publication_date | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| title | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/title |