Excel · study · 2026
Effect of NAT10 knockdown on gene expression in human valve interstitial cells
Listed in NCBI GEO
Calcific aortic valve disease is characterized by osteogenic differentiation and calcification of human valve interstitial cells.
Description
We found that NAT10 expression was increased in calcified human aortic valves and that NAT10 positively regulates the calcification of valve interstitial cells. To investigate the downstream regulatory molecules of NAT10 in human valve interstitial cells, RNA-seq was performed in cells with NAT10 knockdown and matched negative controls.
Transcriptomic comparison between shNAT10 and shNC groups was used to identify NAT10-regulated genes and pathways potentially involved in valve interstitial cell calcification. These data provide a molecular resource for understanding the role of NAT10 in the regulation of human valve interstitial cell function and calcific aortic valve disease.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE335nnn/GSE335315 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE335315 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1477900 ncbi.nlm.nih.gov/bioproject/PRJNA1477900 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Disease 75% · RNA sequencing 65%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE335315 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |