Omics · study · 2026
Transcriptome profiling of the spinal dorsal horn in a rat bone cancer pain model (Sham vs. BCP, part of a study on dexmedetomidine and the Nrf2/Slc7a11/ferroptosis pathway)
Listed in NCBI GEO
Bone cancer pain (BCP) is a major source of cancer-related suffering and is difficult to manage with opioid-based therapy.
Description
This dataset contains bulk RNA-seq data of the spinal dorsal horn from a rat BCP model, generated as part of a study investigating whether dexmedetomidine alleviates BCP by inhibiting spinal ferroptosis via the Nrf2/SLC7A11 pathway. BCP was induced by injecting Walker 256 mammary gland carcinoma cells into the left tibial bone marrow cavity of female Sprague-Dawley rats; sham-operated rats receiving inactivated Walker 256 cells served as controls (n = 3 per group).
Spinal dorsal horn tissues were collected 15 days after inoculation. Compared with the sham group, 1072 genes were differentially expressed in the BCP group (848 up-regulated and 224 down-regulated; |log2 fold change| > 0.5, P < 0.05), with Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis showing significant enrichment of the ferroptosis pathway. These data identify ferroptosis as a core pathogenic pathway in the spinal dorsal horn of BCP rats.
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Funding: Suzhou Applied Basic Research (medical and health) Science and Technology Innovation Project (SYWD2024090).
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE348nnn/GSE348257 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE348257 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1533317 ncbi.nlm.nih.gov/bioproject/PRJNA1533317 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Rattus norvegicus
- From keywords
- Life Sciences
- Inferred from text
- Cancer 75% · RNA sequencing 65%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE348257 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10116 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |