Data · dataset · 2026
Raw data for "Mapping of dynamic allostery within p38 alpha kinase via network analyses and NMR spectroscopy"
Listed in TUDOdata
Description
Project
Description: Kinases are prominent drug targets, particularly in cancer therapy; however, the high degree of conservation within their active sites presents a major challenge for the development of selective inhibitors. This limitation underscores the need for a deeper understanding of kinase conformational ensembles and the allosteric communication pathways that regulate their activity. Here, we employ dynamical network analysis to identify key residues that mediate long-range allosteric communication between the N- and C-lobes of the MAP kinase p38α, thereby linking its principal functional elements.
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By integrating NMR spectroscopy, activity assays, and in silico analyses of the wild-type protein and selected mutants, both in the presence and absence of an active-site inhibitor, we experimentally validate the contribution of these residues to global protein motions and long-range allosteric regulation. Notably, the resulting network reveals communication pathways that couple the lipid-binding domain to an embedded cryptic pocket.
Together, these findings provide mechanistic insight into p38α allostery and highlight new avenues for the rational design of selective allosteric modulators targeting MAP kinases. Dataset Description: This dataset contains files to reproduce the data to be published for the above project. The files in folders for simulation ensembles as well as NMR raw data systems are provided in zip files.
The version 2 has the initial starting structures for MD run. Raw NMR spectra for assignment and relaxation is also provided. Simulation scripts are also provided for reproduction.
Links
Where it is published
- Dataverse dataset page data.tu-dortmund.de/dataset.xhtml?persistentId=doi%3A10.17877%2FRESOLV-2026-MK5LFI… ↗
landing page · from data tu dortmund de
- DOI doi.org/10.17877/resolv-2026-mk5lfitb ↗
DOI / persistent id · from data tu dortmund de
Catalogue records · 1
- Dataverse API data.tu-dortmund.de/api/datasets/:persistentId/?persistentId=doi%3A10.17877%2FRESO… ↗
metadata API · from data tu dortmund de
Topics
- Stated by source
- Chemistry · Medicine, Health and Life Sciences · Physics
- From keywords
- Chemistry · Engineering · Humanities · Life Sciences · Mathematics & Statistics · Medicine & Health · Physics · Social Science
- Inferred from text
- Cancer 75% · Cheminformatics and quantitative structure-activity relationships 75% · Simulation 75%
Provenance · 1 source records, 20 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| TUDOdata | doi:10.17877/RESOLV-2026-MK5LFITB | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[disease].local:disease:cancer | enrichment · data tu dortmund de | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:field:340404 | enrichment · data tu dortmund de | taxonomy-embedding@1.0.0 | title+keywords+description (75%) |
| concepts[field].dataverse_subject:chemistry | source · data tu dortmund de | connector:data_tu_dortmund_de@1.0.0 | /subjects |
| concepts[field].dataverse_subject:medicine-health-and-life-sciences | source · data tu dortmund de | connector:data_tu_dortmund_de@1.0.0 | /subjects |
| concepts[field].dataverse_subject:physics | source · data tu dortmund de | connector:data_tu_dortmund_de@1.0.0 | /subjects |
| concepts[field].local:field:chemistry | mapping · data tu dortmund de | connector:data_tu_dortmund_de@1.0.0 | /subjects |
| concepts[field].local:field:engineering | mapping · data tu dortmund de | connector:data_tu_dortmund_de@1.0.0 | /subjects |
| concepts[field].local:field:humanities | mapping · data tu dortmund de | connector:data_tu_dortmund_de@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · data tu dortmund de | connector:data_tu_dortmund_de@1.0.0 | /subjects |
| concepts[field].local:field:mathematics-statistics | mapping · data tu dortmund de | connector:data_tu_dortmund_de@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · data tu dortmund de | connector:data_tu_dortmund_de@1.0.0 | /subjects |
| concepts[field].local:field:physics | mapping · data tu dortmund de | connector:data_tu_dortmund_de@1.0.0 | /subjects |
| concepts[field].local:field:social-science | mapping · data tu dortmund de | connector:data_tu_dortmund_de@1.0.0 | /subjects |
| concepts[method].local:method:simulation | enrichment · data tu dortmund de | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · data tu dortmund de | connector:data_tu_dortmund_de@1.0.0 | |
| description | source · data tu dortmund de | connector:data_tu_dortmund_de@1.0.0 | /description |
| publication_date | source · data tu dortmund de | connector:data_tu_dortmund_de@1.0.0 | |
| title | source · data tu dortmund de | connector:data_tu_dortmund_de@1.0.0 | /name |
| updated_date | source · data tu dortmund de | connector:data_tu_dortmund_de@1.0.0 | |
| version_label | source · data tu dortmund de | connector:data_tu_dortmund_de@1.0.0 |