Omics · study · 2026
RNAseq to profile transcriptomes of alveolar macrophage from wild type and HDAC1-2 cKO mice
Listed in NCBI GEO
We performed the transcriptomic analysis of alveolar macrophage(AM) isolated from wild type and HDAC1-2 cKO mice.
Description
AM (CD45+CD11c+F4/80+) were sorted from the lung of 2-weeks-old mice. Total RNA from AM was extracted by Trizol reagent according to the manufacturer’s instructions.
Library construction and data processing were performed by Beijing Genomics Institute. Libraries were sequenced on Illumina Hiseq4000.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155965 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155965 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA656217 ncbi.nlm.nih.gov/bioproject/PRJNA656217 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE155965 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |