Omics · study · 2026
Tape strips capture immune and epidermal hyperplasia markers in the major orphan ichthyoses
Listed in NCBI GEO
Description
This pilot study examined gene expression in tape strip samples obtained from 9 patients with Netherton Syndrome (NS), 6 patients with congenital ichthyosiform erythroderma (CIE), 7 patients with lamellar ichthyosis (LI), and 5 patients with epidermolytic ichthyosis (EI), as well as from 18 demographically matched healthy controls. Differential expression was defined with |fold-change/FCH|>2 and false discovery rate/FDR<0.05.
All subtypes shared significant Th17/Th22 upregulation, and Th2 products were particularly increased in NS. Tape strips additionally captured common increases in Th1 and IL4R upregulation in NS, LI, and EI. Epidermal differentiation complex/cornified envelope (EDC-CE) genes were increased in all or most subtypes.
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Changes in immune and EDC-CE tape-strip markers correlated significantly and positively with those measured in biopsies.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE305nnn/GSE305032 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305032 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1304266 ncbi.nlm.nih.gov/bioproject/PRJNA1304266 ↗
project · from NCBI GEO
- PubMed 41966446 pubmed.ncbi.nlm.nih.gov/41966446 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE305032 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |