Archive · dataset · 2015
CTCF loop analysis and prediction scripts and datasets
Listed in Zenodo
Additional files accompanying the study of experimental and predicted CTCF loops in human cell lines by Oti et al. ctcfloopscripts_v1.0.zip: Scripts used in the analysis of CTCF-mediated loops in human cell lines; both experimental ChIA-PET loops as well as predicted loops based on ChIP-seq data.
Description
Zipped file. ctcf_predictedloops_ENCODE_chipseq_datasets.tar.gz: Predicted CTCF loops for 100 ENCODE ChIP-seq datasets. Gzipped tar file. fimo_ctcfmotifs_MA0139_hg19_2.5e-4.bed.gz: genome-wide CTCF motifs in human genome (hg19) detected by FIMO tool.
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- fimo_ctcfmotifs_MA0139_hg19_2.5e-4.bed.gz zenodo.org/api/records/29423/files/fimo_ctcfmotifs_MA0139_hg19_2.5e-4.bed… ↗
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- ctcfloopscripts_v1.0.zip zenodo.org/api/records/29423/files/ctcfloopscripts_v1.0.zip/content ↗
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- zenodo.org /api/records/29423/files/ctcf_predictedloops_ENCODE_chipseq_dat… ↗
ctcf_predictedloops_ENCODE_chipseq_datasets.tar.gz
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Where it is published
- Zenodo record zenodo.org/records/29423 ↗
landing page · from Zenodo
- DOI doi.org/10.5281/zenodo.29423 ↗
DOI / persistent id · from Zenodo
Catalogue records · 1
- Zenodo API zenodo.org/api/records/29423 ↗
metadata API · from Zenodo
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Zenodo | 29423 | 7 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · Zenodo | connector:zenodo@1.0.0 | /metadata/access_right |
| byte_size | source · Zenodo | connector:zenodo@1.0.0 | |
| created_date | source · Zenodo | connector:zenodo@1.0.0 | |
| description | source · Zenodo | connector:zenodo@1.0.0 | /metadata/description |
| license_text | source · Zenodo | connector:zenodo@1.0.0 | |
| publication_date | source · Zenodo | connector:zenodo@1.0.0 | |
| title | source · Zenodo | connector:zenodo@1.0.0 | /metadata/title |
| updated_date | source · Zenodo | connector:zenodo@1.0.0 |