Data · dataset · 2024
Microbiome of Preterm Neonates (Control + Patents with Necrotising Enterocolitis)
Listed in Riga Stradins University dataverse
Fecal samples were collected from patients and, depending on presence of diagnosis of necrotising enterocolitis they were study patients or controls, the microbiome was analyzed.
Description
The main goal is to identify differences in the microbiome of necrotising enterocolitis patients in oppose to the control group. Data is used for doctoral thesis, as well as for publications created by our research group on the relevant topic.
The folder contains microbiome results for each sample by identified microorganisms, a list of samples and a transcript of the file Sample_sheet.CSV. Microbiome sequence data were obtained with an Illumina Nextseq 550 machine (PE150). Samples demultiplexed with bcl-convert v.4.2.7.
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For sequence quality control, the fastp tool via the Galaxy EU platform. Taxonomic annotation of the microbiome was performed with MetaPhlAn2 through the Galaxy EU platform.
Links
Where it is published
- Dataverse dataset page dataverse.rsu.lv/dataset.xhtml?persistentId=doi%3A10.48510%2FFK2%2FROG2VH ↗
landing page · from dataverse rsu lv
- DOI doi.org/10.48510/fk2/rog2vh ↗
DOI / persistent id · from dataverse rsu lv
Catalogue records · 1
- Dataverse API dataverse.rsu.lv/api/datasets/:persistentId/?persistentId=doi%3A10.48510%2FFK2%… ↗
metadata API · from dataverse rsu lv
Topics
- Stated by source
- Medicine, Health and Life Sciences
- From keywords
- Life Sciences · Medicine & Health
- Inferred from text
- Medical microbiology 68%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Riga Stradins University dataverse | doi:10.48510/FK2/ROG2VH | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:group:3207 | enrichment · dataverse rsu lv | taxonomy-embedding@1.1.0 | title+keywords+description (68%) |
| concepts[field].dataverse_subject:medicine-health-and-life-sciences | source · dataverse rsu lv | connector:dataverse_rsu_lv@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · dataverse rsu lv | connector:dataverse_rsu_lv@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · dataverse rsu lv | connector:dataverse_rsu_lv@1.0.0 | /subjects |
| created_date | source · dataverse rsu lv | connector:dataverse_rsu_lv@1.0.0 | |
| description | source · dataverse rsu lv | connector:dataverse_rsu_lv@1.0.0 | /description |
| publication_date | source · dataverse rsu lv | connector:dataverse_rsu_lv@1.0.0 | |
| title | source · dataverse rsu lv | connector:dataverse_rsu_lv@1.0.0 | /name |
| updated_date | source · dataverse rsu lv | connector:dataverse_rsu_lv@1.0.0 | |
| version_label | source · dataverse rsu lv | connector:dataverse_rsu_lv@1.0.0 |