Data · collection · 2017
An R model to calculate the environmental optima for a species response curve
Listed in NASA Earthdata CMR
This record contains the R code for an R2OpenBugs Bayesian model that fits penalised splines to a species response curve and then estimates the means and 95% credible intervals for the optimum, peak, upper and lower limits, and niche breadth.
Description
Two response curves can then be compared and the probability that one curve has an optima greater than the other can then be calculated. Six files are included: Two R2OpenBugs models (one logit transformed to deal with presence-absence data, and one untransformed), the R code for running the models on example data, and 3 files containing the relevant example data (Antarctic mosses).
More information can be found in Ashcroft et al. (2016) Ecological Informatics 34: 35–43, which should be cited in any publications using this model.
Links
Get the data
- Download the data data.aad.gov.au/eds/4544/download ↗
download · from NASA CMR
Where it is published
- DOI doi.org/10.4225/15/5a0d0b47065c7 ↗
DOI / persistent id · from NASA CMR
Documentation and papers
- data.aad.gov.au /aadc/metadata/citation.cfm?entry_id=AAS_4046_Temperature_Optim… ↗
Citation reference for this metadata record and dataset.
documentation · from NASA CMR
- Public information for AAS project AAS_4046 secure3.aad.gov.au/proms/public/projects/report_project_public.cfm?project_no=AAS… ↗
project · from NASA CMR
Catalogue records · 2
- CMR UMM-JSON cmr.earthdata.nasa.gov/search/concepts/C1441950196-AU_AADC.umm_json ↗
metadata API · from NASA CMR
- CMR record cmr.earthdata.nasa.gov/search/concepts/C1441950196-AU_AADC.html ↗
catalogue entry · from NASA CMR
Topics
- Stated by source
- Climate Change Impact Assessment Models · Not provided · Terrestrial Ecosystems
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NASA Earthdata CMR | C1441950196-AU_AADC | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[measured_variable].gcmd:earth-science/biosphere/ecosystems/terrestrial-ecosystems | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[measured_variable].gcmd:earth-science-services/models/climate-change-impact-assessment-models | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[platform].gcmd_platform:not-provided | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| description | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/Abstract |
| license_text | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| publication_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| spatial | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/SpatialExtent |
| temporal | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/TemporalExtents |
| title | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/EntryTitle |
| version_label | source · NASA CMR | connector:nasa_cmr@1.0.0 |