Data · dataset · 2023
Skeletal muscle and blood RNA-seq counts in motor neurone disease cases and controls
Listed in DataCite
Datasets of RNA-sequencing counts consisting of samples of both muscle and blood collected from motor neurone disease cases and healthy controls as recruited from the Royal Brisbane and Women's Hospital.
Description
This dataset consists of gene counts of merged and normalized technical replicates from DESeq2, using alignment and pseudo-alignment techniques from both STAR/Featurecounts as well as Salmon. Additionally, we include the covariates used in our analyses in phenotype files, as well as isoform-level counts as generated by SALMON on the muscle samples for differential transcript analyses.
Links
Where it is published
- Repository landing page espace.library.uq.edu.au/view/UQ:b722f1f ↗
landing page · from DataCite
- DOI doi.org/10.48610/b722f1f ↗
DOI / persistent id · from DataCite
Documentation and papers
- guides.library.uq.edu.au /deposit_your_data/terms_and_conditions ↗
UQ General Usage Terms and Conditions for data publishing in eSpace
license · from DataCite
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.48610/b722f1f ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.48610/b722f1f ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Basic medicine · Gene Expression (incl. Microarray and other genome-wide approaches)
- Inferred from text
- Disease 75% · RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.48610/b722f1f | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[disease].local:disease:disease | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].fos:basic-medicine | source · DataCite | connector:datacite@1.0.0 | |
| concepts[modality].local:modality:rna-seq | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[subject].australian-and-new-zealand-standard-research-classification-fields-of-research:6BB427AB9696C225CA2574180004463E | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license_text | source · DataCite | connector:datacite@1.0.0 | |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |