Excel · study · 2026
Gene expression of Cupriavidus necator H16 in response to itaconic acid, methylsuccinic acid, and mesaconic acid
Listed in NCBI GEO
The genome of Cupriavidus necator H16 encodes multiple homologous enzymes predicted to be involved in itaconic acid metabolism.
Description
Here, we performed RNA-seq analysis to identify genes and gene clusters that are differentially expressed in response to itaconic acid, as well as the metabolically related compounds methylsuccinic acid and mesaconic acid.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE314nnn/GSE314393 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE314393 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1390804 ncbi.nlm.nih.gov/bioproject/PRJNA1390804 ↗
project · from NCBI GEO
- PubMed 42288873 pubmed.ncbi.nlm.nih.gov/42288873 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE314393 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |