Gold Stamp IDs to SRA IDs convertion of the metagenomes of GEMs

A small simple JSON-file containing the mapping from Gold Stamp IDs from the IMG/JGI database to the SRA IDs useable by fastq-dump to download the corresponding metagenomes from NCBI. The GoldIDs are the ones from the Supplemental Table 1 from Nayfach, S., Roux, S., Seshadri, R. et al. A genomic catalog of Earth’s microbiomes. Nat Biotechnol (2020). doi.org/10.1038/s41587-020-0718-6, that have been submited to the Short Read Archive.

The code used to generate this mapping is available at github.com/moritzbuck/jgi2sra_mapper