Omics · study · 2026
A phospho-driven partner switch dictates heterocyst fate in the cyanobacterium Anabaena sp. PCC 7120
Listed in NCBI GEO
Here, we report a dedicated developmental PSS that controls heterocyst differentiation in the multicellular cyanobacterium Anabaena sp.
Description
PCC 7120. Bioinformatic analysis identified a gene cluster encoding the putative anti-sigma factor All2284 (NfsS), anti-anti-sigma factor All2283 (NfsR), and a phosphatase Alr2280 (NfsP).
AlphaFold Multimer confirmed that NfsS and NfsR are structurally similar to sporulation homologs in B. subtilis and predicted a high-confidence complex between them. In vitro, NfsS phosphorylates NfsR on a conserved serine residue. Notably, a catalytic dead mutant of NfsS is unable to phosphorylate NfsR, confirming the kinase activity of NfsS.
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Bacterial two-hybrid and co-purification assays demonstrated that NfsS binds the developmental sigma factors SigC and SigE. Deletion of the nfsR or nfsP genes abolished heterocyst formation and prevented diazotrophic growth. Comparative RNA-seq of the ΔnfsR mutant and wild type revealed downregulation of heterocyst genes in the mutant.
These included the nifHDK nitrogenase subunits encoding genes and the ferredoxin fdxH, consistent with the inability to sustain diazotrophic growth. Our findings establish a phosphorylation-dependent checkpoint that activates heterocyst-specific genes, thereby expanding the functional repertoire of partner-switch mechanisms from stress survival to programmed terminal cell differentiation. This SuperSeries contains the raw RNA-seq reads and processed count data from the wild-type and ΔnfsR mutant strains used in this study.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE321nnn/GSE321668 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE321668 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1429264 ncbi.nlm.nih.gov/bioproject/PRJNA1429264 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE321668 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |