Omics · study · 2026
Robotic Generation and Kinetic Screening of Patient-Derived Glioblastoma Organoids Reveal Pharmaceutical Dynamics
Listed in NCBI GEO
Glioblastoma (GBM) presents a significant challenge in oncology due to its high heterogeneity and poor response to conventional therapies.
Description
Current preclinical models are highly variable, creating disparate patient-derived organoids. We developed a Robot-Directed Organoid Deposition (RODEO) system that reproducibly generates complex patient-derived GBM organoids for high-throughput screening.
RODEO-GBM organoids recapitulate the cellular heterogeneity, specific tumor niches, and complex vascularization of GBM. Integrating tissue-embedded microsensors in RODEO-GBM organoids allowed us to screen 126 FDA-approved oncology drugs, on 1,638 patient-derived organoids, generating 105 data points in 96 hrs. Our screen revealed distinct kinetic patterns of drug responses, identifying transient as well as slow-acting compounds often overlooked by conventional methods.
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Slow-acting drugs preferentially targeted stem-like SOX2+ tumor cells, thus preserving peripheral cell populations. Comparative analysis on RODEO-Liver organoids showed that slow-acting drugs exhibit lower liver toxicity supporting a higher therapeutic index. Coupling RODEO with sensor-based kinetic screening provides critical new insights into pharmaceutical dynamics, paving the way for the identification of more effective treatments for GBM and other cancers.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE271nnn/GSE271440 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE271440 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1131396 ncbi.nlm.nih.gov/bioproject/PRJNA1131396 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Cancer 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE271440 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |