Data · dataset · 2024
Probing the formation of a hetero-dimeric membrane transport complex with dual in vitro and in silico mutagenesis.
Listed in Borealis
This research study investigates the formation of SERCA-PLN complex from a PLN monomer or PLN pentamer in the lipid membrane.
Description
Specifically, a change in binding affinity due to alanine mutations in the transmembrane region of PLN (I18A - L52A) is correlated with calcium transporting activity of SERCA – exhibiting gain-of-function or loss-of-function characteristics due to these mutations. This dataset contains three files involving free-energy calculations for alanine substitution mutations in SERCA-PLN complex (PDB: 4KYT), PLN monomer (PDB: 1FJK) and PLN pentamer (PDB: 2KYV).
These data files were generated using VMD (version 1.9.4) ParseFEP plugin. For additional information, see the methods section of the corresponding publication (doi.org/10.1039/d4sc02915a).
Links
Where it is published
- Dataverse dataset page borealisdata.ca/dataset.xhtml?persistentId=doi%3A10.5683%2FSP3%2F7CKZXG ↗
landing page · from borealisdata ca
- DOI doi.org/10.5683/sp3/7ckzxg ↗
DOI / persistent id · from borealisdata ca
Catalogue records · 1
- Dataverse API borealisdata.ca/api/datasets/:persistentId/?persistentId=doi%3A10.5683%2FSP3%2… ↗
metadata API · from borealisdata ca
Topics
- Stated by source
- Chemistry · Medicine, Health and Life Sciences
- From keywords
- Chemistry · Energy · Engineering · Life Sciences · Medicine & Health
- Inferred from text
- Biochemistry and cell biology 72%
Provenance · 1 source records, 14 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Borealis | doi:10.5683/SP3/7CKZXG | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:group:3101 | enrichment · borealisdata ca | taxonomy-embedding@1.1.0 | title+keywords+description (72%) |
| concepts[field].dataverse_subject:chemistry | source · borealisdata ca | connector:borealisdata_ca@1.0.0 | /subjects |
| concepts[field].dataverse_subject:medicine-health-and-life-sciences | source · borealisdata ca | connector:borealisdata_ca@1.0.0 | /subjects |
| concepts[field].local:field:chemistry | mapping · borealisdata ca | connector:borealisdata_ca@1.0.0 | /subjects |
| concepts[field].local:field:energy | mapping · borealisdata ca | connector:borealisdata_ca@1.0.0 | /subjects |
| concepts[field].local:field:engineering | mapping · borealisdata ca | connector:borealisdata_ca@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · borealisdata ca | connector:borealisdata_ca@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · borealisdata ca | connector:borealisdata_ca@1.0.0 | /subjects |
| created_date | source · borealisdata ca | connector:borealisdata_ca@1.0.0 | |
| description | source · borealisdata ca | connector:borealisdata_ca@1.0.0 | /description |
| publication_date | source · borealisdata ca | connector:borealisdata_ca@1.0.0 | |
| title | source · borealisdata ca | connector:borealisdata_ca@1.0.0 | /name |
| updated_date | source · borealisdata ca | connector:borealisdata_ca@1.0.0 | |
| version_label | source · borealisdata ca | connector:borealisdata_ca@1.0.0 |