Table · dataset · 2019
Data for Determination of secondary species in solution through pump-selective transient absorption spectroscopy and explicit-solvent TDDFT
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The measured electronic excitations of a given species in solution are often a composite of the electronic excitations of various equilibrium species of that molecule.
Description
It is common for a proportion of a species to deprotonate in solution, or form a tautomeric equilibrium, producing new peaks corresponding to the electronic excitations of the new species. One prominent example is alizarin in methanol, which at different temperatures, and in solutions with differing pH, has an isosbestic point between the two dominant excitations at 435 and 540 nm.
The peak at 435 nm has been attributed to alizarin; the peak at 540 nm, however, more likely results from a species in equilibrium with alizarin. In this work, we were able to use both experimental and computational techniques to selectively examine electronic properties of both alizarin and its secondary species in equilibrium. This was achieved through use of transient electronic absorption spectroscopy, following selective photoexcitation of a specific species in equilibrium.
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The resulting transient electronic absorption spectra were compared to the known transient absorption spectra of potential secondary equilibrium species. The ground state absorption spectra associated with each species in equilibrium were predicted using linear-scaling time-dependent density functional theory with an explicitly modeled solvent and compared to the experimental result. This evidence from both techniques combines to suggest that the excitation at 540 nm arises from a specific monoanionic form of alizarin.<br><br>Data is linked at Zenodo. "explicit" - These are explicit-solvent calculations of excited states of alizarin in MeOH using the PBE functional - Files contain results for alizarin-a; alizarin-b; monoanion-a; and monoanion-b - .dat files are inputs; .out files are outputs; and .xyz files are structures - All calculations were conducted in ONETEP version 4.5.9.3 (see www.onetep.org for information on obtaining a license) "implicit" - These are implicit-solvent calculations of alizarin in MeOH using aug-cc-pVTZ and implicit methanol - Functionals include PBE/PBE0/B3LYP/CAM-B3LYP/LS-PBE0 - Files contain results for alizarin-a; alizarin-b; monoanion-a; and monoanion-b - .nw files are inputs; .nw.out files are outputs; and .xyz files are structures - All calculations were conducted in NWChem 6.8 (see nwchem-sw.org) "monoanion_b_rotation" These are the implicit solvent calculations for the rotation around a dihedral angle in monoanion-b - opt_ are restricted geometry optimizations in the electronic ground state (PBE0/cc-pVTZ) - ene_ are TDDFT calculations on the optimized restricted geometries (cam-B3LYP/cc-pVTZ) - .nw files are inputs; .nw.out files are outputs; and .xyz files are structures - All calculations were conducted in NWChem 6.8 (see nwchem-sw.org) "transient_electronic_absorption_spectrometry" - Raw TEAS results for alizarin in methanol at pH = 3,7,9 with pumps at 425 nm and 550 nm -_transients_ denotes results for TEAS -_solvent_ denotes that this was just of the solvent NOTE. only solvent scans for pH = 3 and pH = 7 (425 nm pump) were included due to the low quality of solvent scans at 550 nm
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Where it is published
- DOI doi.org/10.1021/acs.jpca.8b11013 ↗
DOI / persistent id · from figshare com
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
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Topics
- From keywords
- Astronomy & Astrophysics · Chemistry · Computer Science & AI · Earth & Environmental Science · Economics & Finance · Engineering · Humanities · Life Sciences · Medicine & Health · Ocean & Atmospheric Science · Social Science
- Inferred from text
- Density functional theory 75% · Physical chemistry 73%
Provenance · 1 source records, 18 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| figshare | oai:figshare.com:article/33774244 | 12 d ago | JSON v1 |
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