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Data · dataset · 2026

<p>Cryo-EM structure of RhGB07 trimeric spike in a 3-RBD down state.</p>

Listed in ZivaHub and Deakin Research Online and DMU Figshare and UCL Research Data Repository — shown once because both records carry DOI 10.1371/journal.pbio.3003944.g002

<p><b>(A) Left:</b> CryoEM density of the trimer spike coloured by the protomer chains the density originates from.

Description

Glycans are highlighted in teal. <b>Centre:</b> the trimeric spike viewed from the top rendered in cartoon representation. <b>Right:</b> the isolated RhGB07 RBD represented as cartoon in grey with two glycans of interest shown. <b>(B)</b> The C-alpha trace of the RBD of RhGB07 rendered as balls-and-sticks superimposed with the RBD of SARS-CoV-1 (PDB 7DF3) and SARS-CoV-2 (PDB 5X5B).

The insets show a zoomed-in view of two regions of the RBD that show the greatest changes in the position of the C-alpha of the RBD. The region containing the ins1-loop and delta4-loop coincides with putative ACE2-interacting residues based on mapping the equivalent residues of SARS-CoV-1 and SARS-CoV-2. The ACE2-interacting residues were determined by superimposing SARS-CoV-1 and RhGB07 RBD onto the SARS-CoV-2 RBD – ACE2 (PDB: 6M0J) structure and identifying interacting residues.

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Highlighted residues of RhGB07 show the putative interacting residues that differ in identity to SARS-CoV-2. <b>(C)</b> Schematic depicting mutants generated of RhGB07 and SARS-CoV-2 Spikes with either full RBD swaps, or insertions/deletions, respectively. Lentiviral pseudotypes bearing Spikes of RhGB07 or SARS-CoV-2 mutants (RhGB07 wildtype, RhGB07<sub>SARS-CoV-2 RBD</sub>, RhGB07437_438insGGNY, SARS-CoV-2 wildtype, SARS-CoV-2<sub>RhGB07 RBD</sub>, SARS-CoV-2 Δ446−449), were used to infect BHK-21 cells overexpressing human ACE2.

A heatmap illustrating entry is shown, representing the mean log RLU of 3 separate experiments. <b>(D)</b> ELISA data depicting the binding curves and calculated EC<sub>50</sub> values (µg/ml) of recombinant RhGB07, SARS-CoV-2, RhGB07 437_438insGGNY or SARS-CoV-2 Δ446−449 RBDs with recombinant human ACE2. <b>(E)</b> Alignment of the Δ4-loop region of RhGB07 with SARS-CoV-2, SARS-CoV-2, RaTG13, Rs4231, and Rc-o319 (RhGB07 numbering), with differences in amino acid residues shown.

RhGB07 was mutated to introduce an insertion (437_438insGGNY, underlined) or additional mutations (mutated residues coloured in pink) in the Δ4-loop. A heatmap illustrating entry data is shown for pseudoviruses bearing these mutant Spikes, used to infect BHK-21 cells overexpressing <i>Rh pusillus</i>, <i>Rh. affinis</i>, <i>Rh. ferrumequinum</i>, <i>Rh. cornutus</i>, <i>Rh. alcyone and M. lucifugus</i> ACE2s. Data represents the mean log RLU of 4 separate experiments.

A vector-only control (pDISPLAY) was included to demonstrate specificity and to set the background signal. The data underlying this Figure can be found in <a href="plosbiology.org/article/info:doi/10.1371/journal.pbio.3003944#pbio.3003944.s017" target="_blank">S1 Data</a>.</p>

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