Imaging · dataset · 2022
UT-GPCR004 CHO-K1 cell line bright-field and fluorescence microscopy and corresponding segmentation ground truth
Listed in DATADOI
Description
The "UT-GPCR004 CHO-K1 cell line bright-field and fluorescence microscopy and corresponding segmentation ground truth" dataset contains the raw microscopy images, corresponding bright-field Z-stack based contrast-enhanced images and the corresponding manual ground truth for fluorescence and bright-field images as well as ground truth generated from the fluorescence images using either random forest-based Ilastik model or U-Net3 based deep learning model.
The dataset also contains the class balanced version of the ground truth.
Links
Where it is published
- Dataverse dataset page datadoi.ee/dataset.xhtml?persistentId=doi%3A10.23673%2FRE-305 ↗
landing page · from datadoi ee
- DOI doi.org/10.23673/re-305 ↗
DOI / persistent id · from datadoi ee
Catalogue records · 1
- Dataverse API datadoi.ee/api/datasets/:persistentId/?persistentId=doi%3A10.23673%2FRE-3… ↗
metadata API · from datadoi ee
Topics
- Stated by source
- Other
- From keywords
- Microscopy
- Inferred from text
- Image 65%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DATADOI | doi:10.23673/RE-305 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].dataverse_subject:other | source · datadoi ee | connector:datadoi_ee@1.0.0 | /subjects |
| concepts[modality].local:modality:image | enrichment · datadoi ee | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:microscopy | mapping · datadoi ee | vocabulary-mapper@1.0.0 | keywords['fluorescence microscopy'] |
| created_date | source · datadoi ee | connector:datadoi_ee@1.0.0 | |
| description | source · datadoi ee | connector:datadoi_ee@1.0.0 | /description |
| publication_date | source · datadoi ee | connector:datadoi_ee@1.0.0 | |
| title | source · datadoi ee | connector:datadoi_ee@1.0.0 | /name |
| updated_date | source · datadoi ee | connector:datadoi_ee@1.0.0 | |
| version_label | source · datadoi ee | connector:datadoi_ee@1.0.0 |