Omics · study · 2026
Transcription co-repressors Panky and Panky-like are essential for retinal cone photoreceptor integrity and survival by modulating ganglioside metabolism
Listed in NCBI GEO
To investigate the in vivo functions of mouse Panky and its paralog, Panky-like (Ankrd33b), we generated and analyzed the Panky/Panky-like double knockout (PPL DKO) mice.
Description
PPL DKO mice exhibited decreased light-evoked activities, impaired morphology of cone photoreceptors, and disrupted membrane integrity in the cone outer segments and synaptic terminals, followed by cone death at a later stage. RNA-seq analysis revealed that Cerkl gene, whose mutations in human ortholog CERKL cause retinitis pigmentosa (RP26), was upregulated in Panky/Panky-like/Nrl triple KO mouse retinas, in which loss of Nrl converts rods into cones.
Our findings suggest that the regulation of Cerkl expression in cone photoreceptors by Panky and Panky-like is essential for cone photoreceptor integrity and survival.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE314nnn/GSE314562 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE314562 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1391506 ncbi.nlm.nih.gov/bioproject/PRJNA1391506 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE314562 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |