Excel · study · 2026
Ectopic expression of the germline transcription factor LSL-1 contributes to developmental delay following failed maternal epigenetic reprogramming
Listed in NCBI GEO
Proper development requires mechanisms that prevent germline genes from being expressed in non-germline tissues.
Description
In this study, we investigated how the germline transcription factor LSL-1 contributes to developmental defects caused by failed maternal epigenetic reprogramming in Caenorhabditis elegans. We found that LSL-1 becomes ectopically expressed in somatic tissues of spr-5; met-2 mutants and that depletion of LSL-1 partially rescues their developmental delay.
RNA-seq analyses showed extensive overlap between MES-4- and LSL-1-dependent transcriptional programs and revealed that ectopic lsl-1 expression itself depends on MES-4. These findings identify LSL-1 as a downstream effector of MES-4 that promotes aberrant germline-associated transcription and developmental delay.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE345nnn/GSE345214 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE345214 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1519175 ncbi.nlm.nih.gov/bioproject/PRJNA1519175 ↗
project · from NCBI GEO
Topics
- Stated by source
- Caenorhabditis elegans · Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE345214 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:6239 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |