Omics · study · 2026
Effect of 4EHP (nCBP) mutation on gene expression during heat stress responses in Arabidopsis thaliana
Listed in NCBI GEO
Translation initiation factors of the eIF4E family play a crucial role in regulating translation and the cellular metabolism of mRNAs.
Description
In this study, we show that loss of the class II eIF4E known as 4EHP (nCBP) confers enhanced basal and acquired thermotolerance and causes a mild flowering delay without major root defects. Under heat stress, 4EHP-GFP re-localizes from a diffuse cytosolic pattern to cytoplasmatic foci, where it co-localizes with canonical stress granule (SG) markers.
Transcriptomic analysis under control, acclimation and heat stress conditions reveals that 4EHP limits the accumulation of a specific subset of heat-responsive mRNAs, especially those encoding several heat shock proteins (HSPs), which remain constitutively expressed in 4ehp-1 mutant under control conditions and during heat stress. Our results indicate that 4EHP regulates chaperone production, via heat-responsive SG regulatory pathway for the corresponding mRNAs.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE326nnn/GSE326555 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE326555 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1445888 ncbi.nlm.nih.gov/bioproject/PRJNA1445888 ↗
project · from NCBI GEO
Topics
- Stated by source
- Arabidopsis thaliana · Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE326555 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:3702 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |