Omics · study · 2026
Primary human bronchial epithelial cells exposed to acute vs chronic woodsmoke condensate: Responses evaluated using bulk RNA sequencing
Listed in NCBI GEO
Wildfires are increasing in intensity and prevalence and are associated with respiratory health effects such as asthma, bronchitis, and respiratory infections.
Description
Recent research highlights lung cell molecular changes following acute wildfire and woodsmoke exposure. However, chronic, repeat exposure conditions that may be more typical of community-level exposures to wildfire and woodsmoke remain to be characterized in controlled, in vitro molecular toxicology studies.
The goal of this project was to evaluate similarities and differences in transcriptional responses of primary human bronchial epithelial cells (HBECs) exposed to woodsmoke condensate following acute vs. chronic exposure. Woodsmoke condensate was generated from the burning of red oak at smoldering conditions, and cells were exposed for either 4 hours (acute) or 4 hours, 3 days per week, for two weeks (chronic).
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE288nnn/GSE288818 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288818 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1219553 ncbi.nlm.nih.gov/bioproject/PRJNA1219553 ↗
project · from NCBI GEO
- PubMed 41863394 pubmed.ncbi.nlm.nih.gov/41863394 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Forestry sciences 69% · RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE288818 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3007 | enrichment · NCBI GEO | taxonomy-embedding@1.0.0 | title+keywords+description (69%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |