Data · dataset · 2014
Sugarbeet Unigenes Assigned to KEGG Pathways
Listed in DataCite
Fileset contains KEGG pathway maps to which sugarbeet transcript-based unigenes were assigned.
Description
Unigenes were assembled from RNA-seq of sugarbeet leaf and root tissues. Full description of research is available in manuscript, "Generation and characterization of a sugarbeet ( Beta vulgaris L.) transcriptome and transcript-based SSR markers," by KK Fugate, D Fajardo, B Schlautman, JP Ferrareze, MD Bolton, LG Campbell, E Wiesman, and J. Zalapa, The Plant Genome .
Unigene sequences can be found in the fileset, "Sugarbeet transcriptome unigenes" (figshare.com/articles/Sugarbeet_transcriptome_unigenes/843615). KEGG pathway maps were developed by Kanehisa Laboratories and are used with permission. Information regarding KEGG pathways can be found in the following references: Kanehisa, M., Goto, S., Sato, Y., Kawashima, M., Furumichi, M., and Tanabe, M.; Data, information, knowledge and principle: back to metabolism in KEGG.
Read the rest (1 more)
Nucleic Acids Res. 42, D199–D205 (2014); Kanehisa, M. and Goto, S.; KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 28, 27-30 (2000). For information regarding the use of maps, see file, KEGG, readme.txt.
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/KEGG_Pathway_Maps/930724 ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.930724 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.930724 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.930724 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Biological sciences
- From keywords
- Plant biology
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.930724 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:biological-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[modality].local:modality:rna-seq | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (65%) |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |