Data · dataset · 2026
16S rRNA
Listed in ScienceDB
This dataset comprises 16S rRNA gene sequencing data (V3–V4 region, primers 341F/806R) generated from mouse fecal samples using the E.Z.N.A.® Stool DNA Kit, with sequencing performed on the Illumina NovaSeq 6000 platform (PE250 mode).
Description
It includes samples from AOM/DSS and APCmin/+ intervention cohorts, as well as n=5 mice per group from antibiotic depletion (ABX) and fecal microbiota transplantation (FMT) experiments.
Raw reads were processed via QIIME 2 and DADA2 for denoising and amplicon sequence variant (ASV) inference, with taxonomic assignment using the SILVA database. Downstream analyses include alpha diversity (Shannon, Chao1), beta diversity (Bray-Curtis PCoA), and differential abundance testing via LEfSe (LDA > 2.0).
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.37441 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Bioinformatics and computational biology 69% · Sequencing 75%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.37441 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].anzsrc:group:3102 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (69%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license_text | source · scidb cn | connector:scidb_cn@1.0.0 | |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |