Data · dataset · 2026
Development and Application of Long-Fragment Insertion/Deletion Markers in Ficus carica L.
Listed in ScienceDB
This dataset contains supplementary tables and images supporting the development and validation of 56 long‑fragment InDel markers in fig (Ficus carica L.).
Description
Data include resequencing quality, InDel distribution, primer information, DNA fingerprints, and gel/population structure images. File list & description Data file 1: Sequencing statistics.xlsx Type: Spreadsheet (.xlsx) Content: Whole‑genome resequencing quality metrics for four fig accessions (Hongyan, Jin Aofen, Bojihong, Zaohuang), including Q30, GC content, genome coverage, and sequencing depth.
Data file 2: InDel distribution by chromosome.xlsx Type: Spreadsheet (.xlsx) Content: Number of InDel variants detected on each of the 13 fig chromosomes. Data file 3: Genomic region distribution.xlsx Type: Spreadsheet (.xlsx) Content: Distribution of InDels across genomic functional regions (upstream, downstream, intron, exon, UTR, intergenic). Data file 4: InDel length distribution (≥20 bp).xlsx Type: Spreadsheet (.xlsx) Content: Frequency distribution of long‑fragment InDels (≥20 bp) by size class (20–280 bp).
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Data file 5: Primer sequences and polymorphism indices.xlsx Type: Spreadsheet (.xlsx) Content: Primer sequences, chromosomal positions, PIC values, and Shannon diversity indices for the 56 validated InDel markers. Data file 6: DNA fingerprint codes.xlsx Type: Spreadsheet (.xlsx) Content: 56‑digit binary fingerprint codes for 28 fig accessions using the validated InDel marker set. Data file 7: Population structure results.png Type: Image (.png) Content: Admixture proportion bar plot (K=6) for 28 fig accessions, generated by STRUCTURE 2.3.4.
Data file 12: InDel length distribution figure.png Type: Image (.png) Content: Mirrored bar chart showing size distribution of InDels in CDS and whole‑genome contexts across four accessions (R1–R4). Data file 13: Agarose gel electrophoresis.png Type: Image (.png) Content: Electrophoresis images for 26 representative InDel markers (A–Z) across 28 fig accessions.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.38656 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Genetics 70% · Image 75% · Sequencing 75%
Related
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.38656 | 9 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:group:3105 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (70%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:image | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license_text | source · scidb cn | connector:scidb_cn@1.0.0 | |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |