Data · dataset · 2014
Sparse Biclustering of Transposable Data
Listed in DataCite
We consider the task of simultaneously clustering the rows and columns of a large transposable data matrix.
Description
We assume that the matrix elements are normally distributed with a bicluster-specific mean term and a common variance, and perform biclustering by maximizing the corresponding log-likelihood. We apply an ℓ 1 penalty to the means of the biclusters to obtain sparse and interpretable biclusters.
Our proposal amounts to a sparse, symmetrized version of k -means clustering. We show that k -means clustering of the rows and of the columns of a data matrix can be seen as special cases of our proposal, and that a relaxation of our proposal yields the singular value decomposition. In addition, we propose a framework for biclustering based on the matrix-variate normal distribution.
Read the rest (1 more)
The performances of our proposals are demonstrated in a simulation study and on a gene expression dataset. This article has supplementary material online.
Links
Where it is published
- Repository landing page tandf.figshare.com/articles/dataset/Sparse_Biclustering_of_Transposable_Data/1209… ↗
landing page · from DataCite
- Repository landing page tandf.figshare.com/articles/dataset/Sparse_Biclustering_of_Transposable_Data/1209… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.1209699 ↗
DOI / persistent id · from DataCite
- DOI doi.org/10.6084/m9.figshare.1209699.v3 ↗
DOI / persistent id · from DataCite
Documentation and papers
- Creative Commons Attribution 4.0 International creativecommons.org/licenses/by/4.0/legalcode ↗
license · from DataCite
- IsSupplementTo 10.1080/10618600.2013.852554 doi.org/10.1080/10618600.2013.852554 ↗
publication · from DataCite
Catalogue records · 4
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.1209699.v3 ↗
metadata API · from DataCite
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.1209699 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.1209699.v3 ↗
catalogue entry · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.1209699 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Biological sciences · Biological sciences · Mathematics · Mathematics
- From keywords
- Cancer · Cancer · Engineering · Engineering · Life Sciences · Life Sciences · Mathematics & Statistics · Mathematics & Statistics · Microbiology
- Inferred from text
- Simulation 75%
Related
- Inverse of has versionSparse Biclustering of Transposable Data
- Possibly the same asSparse Biclustering of Transposable Data
- Inverse of has versionSparse Biclustering of Transposable Data
- Possibly the same asSparse Biclustering of Transposable Data
Provenance · 2 source records, 21 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.1209699 | 13 d ago | JSON v1 |
| DataCite | 10.6084/m9.figshare.1209699.v3 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[disease].local:disease:cancer | mapping · DataCite | vocabulary-mapper@1.0.0 | keywords['Cancer'] |
| concepts[disease].local:disease:cancer | mapping · DataCite | vocabulary-mapper@1.0.0 | keywords['Cancer'] |
| concepts[field].fos:biological-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:biological-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:mathematics | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:mathematics | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].local:field:engineering | mapping · DataCite | vocabulary-mapper@1.0.0 | keywords['Engineering'] |
| concepts[field].local:field:engineering | mapping · DataCite | vocabulary-mapper@1.0.0 | keywords['Engineering'] |
| concepts[field].local:field:life-sciences | mapping · DataCite | vocabulary-mapper@1.0.0 | keywords['Biological Sciences'] |
| concepts[field].local:field:life-sciences | mapping · DataCite | vocabulary-mapper@1.0.0 | keywords['Biological Sciences'] |
| concepts[field].local:field:mathematics-statistics | mapping · DataCite | vocabulary-mapper@1.0.0 | keywords['Mathematics'] |
| concepts[field].local:field:mathematics-statistics | mapping · DataCite | vocabulary-mapper@1.0.0 | keywords['Mathematics'] |
| concepts[method].local:method:simulation | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |