Omics · study · 2026
Fibroblast–myeloid stromal crosstalk is associated with clinicopathological diversity and clinical outcome in intraductal papillary mucinous neoplasms of the pancreas
Listed in NCBI GEO
We sequenced four single-nucleus RNA (snRNA) libraries from formalin-fixed paraffin-embedded (FFPE) tissued of pancreatic intraductal papillary mucinous neoplasm (IPMN) with distinct histological grades and subtypes.
Description
The snRNA sequencing revealed that fibroblasts were the main source of cell–cell communication, whereas myeloid and mast cells were the main receivers. Therefore, we subclassified fibroblasts into inflammatory (iCAF), myofibroblast (myCAF), and reticular-like (rCAF) subpopulations, and myeloid cells into monocytes, neutrophils, macrophages, and dendritic subpopulations.
Additional analyses revealed that iCAF and rCAF mainly communicated with SPP1^High macrophages and neutrophils via inflammatory pathways. Conversely, myCAF mainly communicated with monocytes and mast cells via ECM-associated pathways.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE330nnn/GSE330472 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE330472 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1464452 ncbi.nlm.nih.gov/bioproject/PRJNA1464452 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Cancer 65% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE330472 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |