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Omics · study · 2026

Fibroblast–myeloid stromal crosstalk is associated with clinicopathological diversity and clinical outcome in intraductal papillary mucinous neoplasms of the pancreas

Listed in NCBI GEO

We sequenced four single-nucleus RNA (snRNA) libraries from formalin-fixed paraffin-embedded (FFPE) tissued of pancreatic intraductal papillary mucinous neoplasm (IPMN) with distinct histological grades and subtypes.

Description

The snRNA sequencing revealed that fibroblasts were the main source of cell–cell communication, whereas myeloid and mast cells were the main receivers. Therefore, we subclassified fibroblasts into inflammatory (iCAF), myofibroblast (myCAF), and reticular-like (rCAF) subpopulations, and myeloid cells into monocytes, neutrophils, macrophages, and dendritic subpopulations.

Additional analyses revealed that iCAF and rCAF mainly communicated with SPP1^High macrophages and neutrophils via inflammatory pathways. Conversely, myCAF mainly communicated with monocytes and mast cells via ECM-associated pathways.

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From keywords
Life Sciences
Inferred from text
Cancer 65% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE33047213 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[disease].local:disease:cancerenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (65%)
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[modality].local:modality:sequencingenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[organism].NCBITaxon:9606source · NCBI GEOconnector:ncbi_geo@1.0.0/taxon
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title